Browse Element(s) Details


Os.9156.1.S1_at

Description gb:AK105185.1
DB_XREF= gi:32990394
TID=Os.9156.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D10, full insert sequence.
FL= gb:AK105185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0771011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07650Os.14148.1.S1_at11/1112+3848390..3852374glutaredoxin-related protein, expressed
LOC_Os12g07670Os.9399.1.S1_at11/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07670Os.5209.2.S1_at1/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07680Os.15933.1.A1_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07680Os.15933.1.A1_s_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07690OsAffx.19537.1.S1_x_at11/1112+3863181..3863606Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os12g07700Os.5621.1.S1_s_at11/1112+3866730..3868852nitrogen fixation protein, putative, expressed
LOC_Os12g07710Os.9156.1.S1_at11/1112+3869943..3870558expressed protein
LOC_Os12g07720Os.276.1.S1_at11/1112+3872349..3876348Activator 1 37 kDa subunit, putative, expressed
LOC_Os12g07730Os.9655.1.S1_s_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07730Os.9655.1.S1_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07740Os.12630.1.S1_at11/1112+3884395..3888692Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g07750OsAffx.22848.4.S1_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.3.S1_x_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.4.S1_x_at1/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9156.1.S1_at--545--1831Chr12:3870156..3870180 (25 bp)
ACGCGGGTGACGTCACTTCAGATCG
LOC_Os12g07710
Os.9156.1.S1_at--1110--4451Chr12:3870132..3870156 (25 bp)
GCCTCGTCGTCGGATGCCATGACAT
LOC_Os12g07710
Os.9156.1.S1_at--1017--6351Chr12:3870120..3870144 (25 bp)
GATGCCATGACATCTCCGATGTGTA
LOC_Os12g07710
Os.9156.1.S1_at--14--471Chr12:3870109..3870133 (25 bp)
ATCTCCGATGTGTAATTCCGTGTAA
LOC_Os12g07710
Os.9156.1.S1_at--697--7991Chr12:3870082..3870106 (25 bp)
GGATGAGAAACCAGAGCTGCAGTTT
LOC_Os12g07710
Os.9156.1.S1_at--300--4931Chr12:3870027..3870051 (25 bp)
GCTTGCTTGCTCATTTGTTCTTCAA
LOC_Os12g07710
Os.9156.1.S1_at--825--6731Chr12:3870011..3870035 (25 bp)
GTTCTTCAATTGTTCATGTCCTGGT
LOC_Os12g07710
Os.9156.1.S1_at--275--9631Chr12:3869998..3870022 (25 bp)
TCATGTCCTGGTCCCGATTGGTTGG
LOC_Os12g07710
Os.9156.1.S1_at--449--8571Chr12:3869980..3870004 (25 bp)
TGGTTGGCCTCTGGATCTGATACTG
LOC_Os12g07710
Os.9156.1.S1_at--211--6411Chr12:3869967..3869991 (25 bp)
GATCTGATACTGTTCTTGTCAATGC
LOC_Os12g07710
Os.9156.1.S1_at--1076--631Chr12:3869946..3869970 (25 bp)
ATGCAAATTTCTGAATGCCATTGTT
LOC_Os12g07710
Target Sequence 
ACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGA
GAAACCAGAGCTGCAGTTTCTTNGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCATTTGTTCTTCAATTGTTC
ATGTCCTGGTCCCGATTGGTTGGCCTCTGGATCTGATACTGTTCTTGTCAATGCAAATTTCTGAATGCCATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis