Browse Element(s) Details


Os.15933.1.A1_at

Description gb:CB684538
DB_XREF= gi:29688263
DB_XREF=OSJNEf14C15.r
CLONE=OSJNEf14C15
TID=Os.15933.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15933 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200806.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0768011/11RNase P subunit p30 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07630Os.14491.2.S1_x_at4/1112+3829411..3835996transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07630Os.47463.1.S1_x_at4/1112+3829411..3835996transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07640Os.51540.1.S1_at11/1112+3839894..3841154MYB10, putative, expressed
LOC_Os12g07640Os.57514.1.S1_x_at2/1112+3839894..3841154MYB10, putative, expressed
LOC_Os12g07650Os.14148.1.S1_at11/1112+3848390..3852374glutaredoxin-related protein, expressed
LOC_Os12g07670Os.9399.1.S1_at11/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07670Os.5209.2.S1_at1/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07680Os.15933.1.A1_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07680Os.15933.1.A1_s_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07690OsAffx.19537.1.S1_x_at11/1112+3863181..3863606Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os12g07700Os.5621.1.S1_s_at11/1112+3866730..3868852nitrogen fixation protein, putative, expressed
LOC_Os12g07710Os.9156.1.S1_at11/1112+3869943..3870558expressed protein
LOC_Os12g07720Os.276.1.S1_at11/1112+3872349..3876348Activator 1 37 kDa subunit, putative, expressed
LOC_Os12g07730Os.9655.1.S1_s_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07730Os.9655.1.S1_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07740Os.12630.1.S1_at11/1112+3884395..3888692Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0000213molecular_functiontRNA-intron endonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15933.1.A1_at--25--9491Chr12:3860662..3860686 (25 bp)
TCTGCTATCTTTGGAATTGCCAGCT
LOC_Os12g07680
Os.15933.1.A1_at--817--3831Chr12:3860661..3860685 (25 bp)
CTGCTATCTTTGGAATTGCCAGCTT
LOC_Os12g07680
Os.15933.1.A1_at--738--4871Chr12:3860659..3860683 (25 bp)
GCTATCTTTGGAATTGCCAGCTTAC
LOC_Os12g07680
Os.15933.1.A1_at--415--10151Chr12:3860657..3860681 (25 bp)
TATCTTTGGAATTGCCAGCTTACAA
LOC_Os12g07680
Os.15933.1.A1_at--955--5351Chr12:3860586..3860610 (25 bp)
GAAGATGATTGAACTACTGCATTTA
LOC_Os12g07680
Os.15933.1.A1_at--471--6291Chr12:3860583..3860607 (25 bp)
GATGATTGAACTACTGCATTTACCT
LOC_Os12g07680
Os.15933.1.A1_at--545--6551Chr12:3860580..3860604 (25 bp)
GATTGAACTACTGCATTTACCTTAT
LOC_Os12g07680
Os.15933.1.A1_at--649--8971Chr12:3860577..3860601 (25 bp)
TGAACTACTGCATTTACCTTATGAT
LOC_Os12g07680
Os.15933.1.A1_at--546--2531Chr12:3860575..3860599 (25 bp)
AACTACTGCATTTACCTTATGATGG
LOC_Os12g07680
Os.15933.1.A1_at--277--3731Chr12:3860573..3860597 (25 bp)
CTACTGCATTTACCTTATGATGGTG
LOC_Os12g07680
Os.15933.1.A1_at--645--2071Chr12:3860437..3860461 (25 bp)
ACTTGTGTATTGTCTGAAGAATAGG
LOC_Os12g07680
Target Sequence 
TCTGCTATCTTTGGAATTGCCAGCTTACAAAGGAGAACCACNATCTCTTGATATAAATCCAGAACCTTCTGCCNATGAAG
ATGATTGAACTACTGCATTTACCTTATGATGGTGATGAGTCCCTCTTTGTCGAGCAGCAAGAGCAGTTNAGCCATGGCAA
CGAAATCCTATTCCCAGTTGAAACTCAAGAAGGGCCTGTGCAAGTTAGCAGAGTGAAGTCTTATGACTTGTGTATTGTCT
GAAGAATAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15933.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis