Browse Element(s) Details


Os.51540.1.S1_at

Description gb:D88618.1
DB_XREF= gi:2605618
GEN=Osmyb2
TID=Os.51540.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51540 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OSMYB2, complete cds.
PROD=OSMYB2
FL= gb:D88618.1 gb:AK063027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0764011/11MYB10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07620OsAffx.21870.2.S1_x_at4/1112+3821609..3823507hypothetical protein
LOC_Os12g07620OsAffx.21870.3.S1_x_at4/1112+3821609..3823507hypothetical protein
LOC_Os12g07630Os.14491.2.S1_x_at4/1112+3829411..3835996transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07630Os.47463.1.S1_x_at4/1112+3829411..3835996transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07640Os.51540.1.S1_at11/1112+3839894..3841154MYB10, putative, expressed
LOC_Os12g07640Os.57514.1.S1_x_at2/1112+3839894..3841154MYB10, putative, expressed
LOC_Os12g07650Os.14148.1.S1_at11/1112+3848390..3852374glutaredoxin-related protein, expressed
LOC_Os12g07670Os.9399.1.S1_at11/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07670Os.5209.2.S1_at1/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07680Os.15933.1.A1_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07680Os.15933.1.A1_s_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07690OsAffx.19537.1.S1_x_at11/1112+3863181..3863606Chalcone and stilbene synthases, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51540.1.S1_at--754--8051Chr12:3840782..3840806 (25 bp)
GGAGCGACGGCGAGCTACACCTACC
LOC_Os12g07640
Os.51540.1.S1_at--382--2811Chr12:3840833..3840857 (25 bp)
AAGATATGCCTGTGCTTGAACCACC
LOC_Os12g07640
Os.51540.1.S1_at--1051--8671Chr12:3840843..3840867 (25 bp)
TGTGCTTGAACCACCTCGGGCTGCA
LOC_Os12g07640
Os.51540.1.S1_at--1011--8371Chr12:3840934..3840958 (25 bp)
GGCGAGCTCGCGAGCGTTCACATTC
LOC_Os12g07640
Os.51540.1.S1_at--727--6751Chr12:3840949..3840973 (25 bp)
GTTCACATTCGCCAATGCATCGTCG
LOC_Os12g07640
Os.51540.1.S1_at--249--651Chr12:3840963..3840987 (25 bp)
ATGCATCGTCGTCAACAGTGTAAAA
LOC_Os12g07640
Os.51540.1.S1_at--333--3151Chr12:3840996..3841020 (25 bp)
AATTCAGCGATTTTCAGACTAAGAG
LOC_Os12g07640
Os.51540.1.S1_at--614--6151Chr12:3841030..3841054 (25 bp)
GAGGTAGAGCACATGCATGCTGAAT
LOC_Os12g07640
Os.51540.1.S1_at--644--3031Chr12:3841070..3841094 (25 bp)
AATCCAAGCTTGAGCTAGGCATCTA
LOC_Os12g07640
Os.51540.1.S1_at--4--3711Chr12:3841084..3841108 (25 bp)
CTAGGCATCTAGCTAACTTTGTGAT
LOC_Os12g07640
Os.51540.1.S1_at--1055--391Chr12:3841118..3841142 (25 bp)
ATCAGCTAGCAAAATCATCATAATC
LOC_Os12g07640
Target Sequence 
GGAGCGACGGCGAGCTACACCTACCACCACCACTACTCGGAGACGAGGGAGAAGATATGCCTGTGCTTGAACCACCTCGG
GCTGCACGGCGGCGACGAGTGCAGCTGCGGCGGCTCGTCGGCCTCTTCCTCCTCCTCGCCGCCGCCGGCGACGGCGAGCT
CGCGAGCGTTCACATTCGCCAATGCATCGTCGTCAACAGTGTAAAACACAGAGAAATTCAGCGATTTTCAGACTAAGAGA
ATTAATGAGAGGTAGAGCACATGCATGCTGAATTAATTGAATTAACTCAATCCAAGCTTGAGCTAGGCATCTAGCTAACT
TTGTGATTTGATCATGATCAGCTAGCAAAATCATCATAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis