Browse Element(s) Details


Os.9399.1.S1_at

Description gb:AK069143.1
DB_XREF= gi:32979167
TID=Os.9399.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004K23, full insert sequence.
FL= gb:AK069143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0767011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07630Os.14491.2.S1_x_at4/1112+3829411..3835996transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07630Os.47463.1.S1_x_at4/1112+3829411..3835996transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07640Os.51540.1.S1_at11/1112+3839894..3841154MYB10, putative, expressed
LOC_Os12g07640Os.57514.1.S1_x_at2/1112+3839894..3841154MYB10, putative, expressed
LOC_Os12g07650Os.14148.1.S1_at11/1112+3848390..3852374glutaredoxin-related protein, expressed
LOC_Os12g07670Os.9399.1.S1_at11/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07670Os.5209.2.S1_at1/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07680Os.15933.1.A1_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07680Os.15933.1.A1_s_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07690OsAffx.19537.1.S1_x_at11/1112+3863181..3863606Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os12g07700Os.5621.1.S1_s_at11/1112+3866730..3868852nitrogen fixation protein, putative, expressed
LOC_Os12g07710Os.9156.1.S1_at11/1112+3869943..3870558expressed protein
LOC_Os12g07720Os.276.1.S1_at11/1112+3872349..3876348Activator 1 37 kDa subunit, putative, expressed
LOC_Os12g07730Os.9655.1.S1_s_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07730Os.9655.1.S1_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07740Os.12630.1.S1_at11/1112+3884395..3888692Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006944biological_processmembrane fusion
GO:0009524cellular_componentphragmoplast
GO:0016021cellular_componentintegral to membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9399.1.S1_at--353--7771Chr12:3859444..3859468 (25 bp)
GGTGCTATTGGCTATCTAGGGTCAA
LOC_Os12g07670
Os.9399.1.S1_at--90--1531Chr12:3859535..3859559 (25 bp)
AGCAGATCACATGTTGTCACTGGAA
LOC_Os12g07670
Os.9399.1.S1_at--1075--9771Chr12:3859604..3859628 (25 bp)
TAAGTTTTTTGAGCCACAGACCGAA
LOC_Os12g07670
Os.9399.1.S1_at--617--7551Chr12:3859632..3859656 (25 bp)
GGGCCATGATCTCCTAACTTAATAT
LOC_Os12g07670
Os.9399.1.S1_at--889--9831Chr12:3859656..3859680 (25 bp)
TAAATACATTCATACGCCTACTCTC
LOC_Os12g07670
Os.9399.1.S1_at--559--4451Chr12:3859671..3859695 (25 bp)
GCCTACTCTCTTTTTTGACTATGTC
LOC_Os12g07670
Os.9399.1.S1_at--1074--5691Chr12:3859687..3859711 (25 bp)
GACTATGTCGCCCTGATTATGCATA
LOC_Os12g07670
Os.9399.1.S1_at--743--10531Chr12:3859782..3859806 (25 bp)
TTCATGCGGCACTAGATTTCTTCTC
LOC_Os12g07670
Os.9399.1.S1_at--108--10571Chr12:3859799..3859823 (25 bp)
TTCTTCTCTTCGTATGGATTGGACC
LOC_Os12g07670
Os.9399.1.S1_at--244--8671Chr12:3859831..3859855 (25 bp)
TGTGGATTCCAATTCAAGGCTGTCA
LOC_Os12g07670
Os.9399.1.S1_at--1135--2931Chr12:3859846..3859870 (25 bp)
AAGGCTGTCATTTTACCACGAGCAC
LOC_Os12g07670
Target Sequence 
GGTGCTATTGGCTATCTAGGGTCAACTCTTTTTGTGAGGAGAATCTACAGAAACATCAAATGTGATTAGATGATCGCAGT
TTGGAAGACATAGCAGATCACATGTTGTCACTGGAACTGTGGTAGAGAGGCCAAGAAGTGGATTAATGCTAGATGCTGAT
TAAGTTTTTTGAGCCACAGACCGAAGGGGGGCCATGATCTCCTAACTTAATATAAATACATTCATACGCCTACTCTCTTT
TTTGACTATGTCGCCCTGATTATGCATACCTGTGGTAGTTGAGGATTTGGTTGGTTTTTTAATCAGAAGTAGGATGTAAC
ATTGTAACATGTGAAATATTCATGCGGCACTAGATTTCTTCTCTTCGTATGGATTGGACCGGGGGCTTGTGGATTCCAAT
TCAAGGCTGTCATTTTACCACGAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis