Browse Element(s) Details


Os.14148.1.S1_at

Description gb:AK060940.1
DB_XREF= gi:32970958
TID=Os.14148.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-C08, full insert sequence.
FL= gb:AK060940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0765011/11glutaredoxin-related protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07620OsAffx.21870.2.S1_x_at4/1112+3821609..3823507hypothetical protein
LOC_Os12g07620OsAffx.21870.3.S1_x_at4/1112+3821609..3823507hypothetical protein
LOC_Os12g07630Os.14491.2.S1_x_at4/1112+3829411..3835996transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07630Os.47463.1.S1_x_at4/1112+3829411..3835996transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07640Os.51540.1.S1_at11/1112+3839894..3841154MYB10, putative, expressed
LOC_Os12g07640Os.57514.1.S1_x_at2/1112+3839894..3841154MYB10, putative, expressed
LOC_Os12g07650Os.14148.1.S1_at11/1112+3848390..3852374glutaredoxin-related protein, expressed
LOC_Os12g07670Os.9399.1.S1_at11/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07670Os.5209.2.S1_at1/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07680Os.15933.1.A1_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07680Os.15933.1.A1_s_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07690OsAffx.19537.1.S1_x_at11/1112+3863181..3863606Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os12g07700Os.5621.1.S1_s_at11/1112+3866730..3868852nitrogen fixation protein, putative, expressed
LOC_Os12g07710Os.9156.1.S1_at11/1112+3869943..3870558expressed protein
LOC_Os12g07720Os.276.1.S1_at11/1112+3872349..3876348Activator 1 37 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006812biological_processcation transport
GO:0005739cellular_componentmitochondrion
GO:0005489molecular_functionelectron transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14148.1.S1_at--219--1811Chr12:3848915..3848939 (25 bp)
ACCCCAGTGCGGTTTCTCGCAAAGG
LOC_Os12g07650
Os.14148.1.S1_at--319--5371Chr12:3848801..3848825 (25 bp)
GAAGACATACAGCAACTGGCCGACT
LOC_Os12g07650
Os.14148.1.S1_at--385--7371Chr12:3848736..3848760 (25 bp)
GTGACATTGTTTCATCCATGGCCGA
LOC_Os12g07650
Os.14148.1.S1_at--932--5571Chr12:3848684..3848708 (25 bp)
GAAATAGGACTCACTCTGGAGTGCT
LOC_Os12g07650
Os.14148.1.S1_at--433--3771Chr12:3848671..3848695 (25 bp)
CTCTGGAGTGCTTAAGTAATGCCTT
LOC_Os12g07650
Os.14148.1.S1_at--576--5471Chr12:3848646..3848670 (25 bp)
GAACTACTGTTACCTGATGCGAATC
LOC_Os12g07650
Os.14148.1.S1_at--297--6351Chr12:3848631..3848655 (25 bp)
GATGCGAATCGCTAGCTTGGCAGCT
LOC_Os12g07650
Os.14148.1.S1_at--996--3011Chr12:3848583..3848607 (25 bp)
AATGCTTCATTTACTGCAAGGCACA
LOC_Os12g07650
Os.14148.1.S1_at--1092--5171Chr12:3848568..3848592 (25 bp)
GCAAGGCACATTGGTTTGGATCAGT
LOC_Os12g07650
Os.14148.1.S1_at--1120--2071Chr12:3848540..3848564 (25 bp)
ACATATACACGTTTCTTTGATTCAG
LOC_Os12g07650
Os.14148.1.S1_at--601--7111Chr12:3848446..3848470 (25 bp)
GTCAGTATTTTGTGGTCGTTTCAGA
LOC_Os12g07650
Target Sequence 
ACCCCAGTGCGGTTTCTCGCAAAGGNTTGTGGGAATCTTGGAATCACATGGAGTAGATTTTNGTAACCGTTGATGTTCTT
GANCGAGGAGCACAACCATGGGTTGCGAGAAACCCTGAAGACATACAGCAACTGGCCGACTTTCNCACAGGTTTTTGTTG
GAGGGGAGCTTGTGGGTGGATGTGACATTGTTTCATCCATGGCCGAGAAGGGGGAGCTTGCNGCCCTTTTTAAGAAATAG
GACTCACTCTGGAGTGCTTAAGTAATGCCTTGAACTACTGTTACCTGATGCGAATCGCTAGCTTGGCAGCTANCATCATT
TTACATGCTGCAGTAATGCTTCATTTACTGCAAGGCACATTGGTTTGGATCAGTTATACATATACACGTTTCTTTGATTC
AGATGAGGAAATGCTGTAAATTGTAATATGGTGGTTGCTTTTTGAGAGAGGATTTGCAAGGGCNAGAGGGCTGTCAGTAT
TTTGTGGTCGTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis