Browse Element(s) Details


Os.276.1.S1_at

Description gb:AB045677.1
DB_XREF= gi:10798805
GEN=OsRFC2
TID=Os.276.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.276 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRFC2 mRNA for replication factor C 37 kDa subunit, complete cds.
PROD=replication factor C 37 kDa subunit
FL= gb:AB045677.1 gb:AK103718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0772011/11Activator 1 37 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07650Os.14148.1.S1_at11/1112+3848390..3852374glutaredoxin-related protein, expressed
LOC_Os12g07670Os.9399.1.S1_at11/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07670Os.5209.2.S1_at1/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07680Os.15933.1.A1_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07680Os.15933.1.A1_s_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07690OsAffx.19537.1.S1_x_at11/1112+3863181..3863606Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os12g07700Os.5621.1.S1_s_at11/1112+3866730..3868852nitrogen fixation protein, putative, expressed
LOC_Os12g07710Os.9156.1.S1_at11/1112+3869943..3870558expressed protein
LOC_Os12g07720Os.276.1.S1_at11/1112+3872349..3876348Activator 1 37 kDa subunit, putative, expressed
LOC_Os12g07730Os.9655.1.S1_s_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07730Os.9655.1.S1_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07740Os.12630.1.S1_at11/1112+3884395..3888692Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g07750OsAffx.22848.4.S1_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.3.S1_x_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.4.S1_x_at1/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005663cellular_componentDNA replication factor C complex
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.276.1.S1_at--1021--3791Chr12:3874736..3874760 (25 bp)
CTCGCTTATTTGGATCTTCTATTTC
LOC_Os12g07720
Os.276.1.S1_at--70--7591Chr12:3875136..3875159 (24 bp)
GGGCTATCCCTGAAGACGTTGTCAA
LOC_Os12g07720
Os.276.1.S1_at--406--5771Chr12:3875149..3875173 (25 bp)
GACGTTGTCAAGTCATTGCTTGCAT
LOC_Os12g07720
Os.276.1.S1_at--676--10391Chr12:3875222..3875246 (25 bp)
TTATTGCAGATGGATACCCCGTTTC
LOC_Os12g07720
Os.276.1.S1_at--919--4191Chr12:3875239..3875262 (24 bp)
CCCGTTTCACAGTTGATCTCACAGT
LOC_Os12g07720
Os.276.1.S1_at--493--591Chr12:3875968..3875992 (25 bp)
ATGCCACAAACGCTGGTCTTCTAAG
LOC_Os12g07720
Os.276.1.S1_at--581--2331Chr12:3876007..3876031 (25 bp)
AAAGATGACGCAGGTGGCCATTTCT
LOC_Os12g07720
Os.276.1.S1_at--965--8431Chr12:3876022..3876046 (25 bp)
GGCCATTTCTGCGAGGGATATCTTC
LOC_Os12g07720
Os.276.1.S1_at--419--6511Chr12:3876038..3876062 (25 bp)
GATATCTTCTGTCTCCTTTCCAAGT
LOC_Os12g07720
Os.276.1.S1_at--498--8191Chr12:3876075..3876099 (25 bp)
GGAAGCTCATTTTCTCGACAGACTG
LOC_Os12g07720
Os.276.1.S1_at--767--3071Chr12:3876132..3876156 (25 bp)
AATAGTGTGAACTCCACCCTTGTAA
LOC_Os12g07720
Target Sequence 
CTCGCTTATTTGGATCTTCTATTTCTTCTACTGACTTGATTAGTGTTTCAGGGGCTATCCCTGAAGACGTTGTCAAGTCA
TTGCTTGCATCTTGCAAATCTGGTGAATTTGATGTGGCAAACAAGGAAGTCAATAATATTATTGCAGATGGATACCCCGT
TTCACAGTTGATCTCACAGTTTCTAGATGTGATAGTTAATGCCGATGATATTCCAGATGAGCAGAAGGCAAGAATATGTA
AAAAGCTTGGGGAAGCAGATAAGTGCTTGGTCGATGGAGCGGATGAGTATTTACAGCTTTTGGATGTGGCTAGTGAGACT
ATCCGNGCTCTTTTTGACATGCCACAAACGCTGGTCTTCTAAGAGAACATGGATTGGAAAGATGACGCAGGTGGCCATTT
CTGCGAGGGATATCTTCTGTCTCCTTTCCAAGTTTAGGTTCTGGGGGAAGCTCATTTTCTCGACAGACTGTTGTGCCTTT
TTTATGTTTGTGATGGGGATTAAATAGTGTGAACTCCACCCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis