Browse Element(s) Details

Description

gb:BI802763
DB_XREF= gi:16575467
DB_XREF=H089B12
CLONE=H089B12
TID=Os.19990.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19990 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g48610	2/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g48590	Os.8928.1.S1_at	11/11	5	+	27762617..27767121	Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48590	Os.56074.1.S1_at	1/11	5	+	27762617..27767121	Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48600	Os.49512.1.S1_at	11/11	5	+	27777358..27781768	Glycosyltransferase family 43 protein, expressed
LOC_Os05g48600	Os.49512.1.S1_s_at	11/11	5	+	27777358..27781768	Glycosyltransferase family 43 protein, expressed
LOC_Os05g48610	OsAffx.15153.1.S1_x_at	11/11	5	+	27784557..27785049	expressed protein
LOC_Os05g48610	Os.19990.1.S1_x_at	2/11	5	+	27784557..27785049	expressed protein
LOC_Os05g48620	Os.15195.1.S1_at	11/11	5	+	27785202..27794256	expressed protein
LOC_Os05g48630	Os.10136.1.S1_at	11/11	5	+	27795383..27796345	Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640	Os.48456.1.S1_at	11/11	5	+	27796794..27799616	pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650	OsAffx.15154.1.S1_at	8/11	5	+	27800234..27801140	DNA-binding protein, putative, expressed
LOC_Os05g48660	Os.17666.1.S1_at	11/11	5	+	27803341..27806137	Protein kinase domain containing protein, expressed
LOC_Os05g48670	OsAffx.27371.1.S1_at	11/11	5	+	27809352..27812420	Tub family protein, expressed

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.19990.1.S1_x_at--624--405	1	NONE	CGATGATCTGCTTCGCGGGGACCGA	NONE
Os.19990.1.S1_x_at--907--1063	1	Chr05:27784931..27784953 (22 bp)	TTCGCGGGGACCGAGCGTTTCACTG	LOC_Os05g48610
Os.19990.1.S1_x_at--261--583	1	Chr05:27784939..27784961 (23 bp)	GACCGAGCGTTTCACTGTTGTAGCA	LOC_Os05g48610
Os.19990.1.S1_x_at--928--333	1	NONE	CACTGTTGTAGCATGATGATGTATT	NONE
Os.19990.1.S1_x_at--1134--867	1	NONE	TGATGTATTAAACCAGGAGTGGTGT	NONE
Os.19990.1.S1_x_at--19--265	1	NONE	AACCAGGAGTGGTGTATGATGTACC	NONE
Os.19990.1.S1_x_at--765--433	1	NONE	CCAGGAGTGGTGTATGATGTACCAT	NONE
Os.19990.1.S1_x_at--657--803	1	NONE	GGAGTGGTGTATGATGTACCATCCC	NONE
Os.19990.1.S1_x_at--1053--611	1	NONE	GAGTGGTGTATGATGTACCATCCCT	NONE
Os.19990.1.S1_x_at--75--111	1	NONE	AGTGGTGTATGATGTACCATCCCTC	NONE
Os.19990.1.S1_x_at--1012--875	1	NONE	TGTACCATCCCTCCTTCGAATTCAA	NONE

Target Sequence

CGATGATCTGCTTCGCGGGGACCGAGCGTTTCACTGTTGTAGCATGATGATGTATTAAACCAGGAGTGGTGTATGATGTA
CCATCCCTCCTTCGAATTCAA

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: