Browse Element(s) Details


Os.19995.1.S1_at

Description gb:BI803010
DB_XREF= gi:16575714
DB_XREF=H097G07
CLONE=H097G07
TID=Os.19995.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19995 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g345101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein
LOC_Os05g34490OsAffx.30677.5.S1_x_at11/115+20365054..20367044hypothetical protein
LOC_Os05g34490OsAffx.30677.1.S1_x_at5/115+20365054..20367044hypothetical protein
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19995.1.S1_at--237--7791NONE
GGTGCGTCGCATATGGAGGCACCCC
NONE
Os.19995.1.S1_at--799--4931NONE
GCATATGGAGGCACCCCCATGGCGT
NONE
Os.19995.1.S1_at--576--4211NONE
CCCCATGGCGTTGGTGGTTCCTATG
NONE
Os.19995.1.S1_at--1112--9411Chr05:20374262..20374287 (24 bp)
TCGTGCTCTGCGATCATCGCTACCT
LOC_Os05g34510
Os.19995.1.S1_at--300--9151NONE
TGCGATCATCGCTACCTCACGTTGC
NONE
Os.19995.1.S1_at--221--3551NONE
CATCGCTACCTCACGTTGCTTCTGT
NONE
Os.19995.1.S1_at--91--9671NONE
TCACGTTGCTTCTGTTCCGTTGGTC
NONE
Os.19995.1.S1_at--237--3371NONE
CACCAAGGTGGAAGACCCATGACGG
NONE
Os.19995.1.S1_at--334--8511NONE
TGGAAGACCCATGACGGGAGTTCTT
NONE
Os.19995.1.S1_at--928--7411NONE
GTGTTCCTTGATTCCATGGCGTAAT
NONE
Os.19995.1.S1_at--375--6691NONE
GTTCCTTGATTCCATGGCGTAATTG
NONE
Target Sequence 
GGTGCGTCGCATATGGAGGCACCCCCATGGCGTTGGTGGTTCCTATGGCCCGGTGATCGTGCTCTGCGATCATCGCTACC
TCACGTTGCTTCTGTTCCGTTGGTCAGCTTTGCGTGGGACGTGGCACACCCATCAAGCCTGGCAAGGTATGGGACCTTTG
TGAAGAAGAGCATAGGAGGGAACAAGCTGCCTATGATGATGCCCTCCCCTGAGAAGAAGAAGGAAGAAGACGTGGAGAAC
GCCACTGTGGAGGAGGTGGAGAAATCGGACCACCAAGGTGGAAGACCCATGACGGGAGTTCTTCTCAAGTGAGCTCTAGT
ATGGGAATCGATCTTTTTTTTTTTTTGCTTTTTGGAGGGTTTCCAAGACTCTTTCTGTGTGTTCCTTGATTCCATGGCGT
AATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis