Browse Element(s) Details


Os.52658.1.S1_at

Description gb:AK068601.1
DB_XREF= gi:32978618
TID=Os.52658.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153B01, full insert sequence.
FL= gb:AK068601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3450011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein
LOC_Os05g34490OsAffx.30677.5.S1_x_at11/115+20365054..20367044hypothetical protein
LOC_Os05g34490OsAffx.30677.1.S1_x_at5/115+20365054..20367044hypothetical protein
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52658.1.S1_at--335--1091Chr05:20372741..20372765 (25 bp)
AGTGGCCGCGTGAGTTTGCGTTCCA
LOC_Os05g34500
Os.52658.1.S1_at--1008--9171Chr05:20372762..20372786 (25 bp)
TCCACTTCCAATCATGTCAAATCGC
LOC_Os05g34500
Os.52658.1.S1_at--247--3191Chr05:20372770..20372794 (25 bp)
CAATCATGTCAAATCGCGGCGAAAC
LOC_Os05g34500
Os.52658.1.S1_at--562--531Chr05:20372782..20372806 (25 bp)
ATCGCGGCGAAACCTGTGAATACAT
LOC_Os05g34500
Os.52658.1.S1_at--911--6431Chr05:20372830..20372854 (25 bp)
GATCATCAGTTCATCGCTGGAGCTG
LOC_Os05g34500
Os.52658.1.S1_at--831--10031Chr05:20372876..20372900 (25 bp)
TAGTTGAACCGGTTCGGATTTCGTG
LOC_Os05g34500
Os.52658.1.S1_at--880--9411Chr05:20372896..20372920 (25 bp)
TCGTGTTTTTAATTAGTTCTCTCTC
LOC_Os05g34500
Os.52658.1.S1_at--473--9751Chr05:20372905..20372929 (25 bp)
TAATTAGTTCTCTCTCCCTCTTTTT
LOC_Os05g34500
Os.52658.1.S1_at--1110--7731Chr05:20373002..20373026 (25 bp)
GGTGTTTCTACTGTAATTACTTGTT
LOC_Os05g34500
Os.52658.1.S1_at--830--6631Chr05:20373024..20373048 (25 bp)
GTTGTTGTTATACACGGCAGATTTT
LOC_Os05g34500
Os.52658.1.S1_at--786--151Chr05:20373044..20373068 (25 bp)
ATTTTGAACTTTGTTCTGCCTCTCG
LOC_Os05g34500
Target Sequence 
AGTGGCCGCGTGAGTTTGCGTTCCACTTCCAATCATGTCAAATCGCGGCGAAACCTGTGAATACATACNCCTGACCTGGT
GGCCGCCATGATCATCAGTTCATCGCTGGAGCTGGAGATTGTGGCGAAGATTGATTAGTTGAACCGGTTCGGATTTCGTG
TTTTTAATTAGTTCTCTCTCCCTCTTTTTTTTTNTCTTGTTTGGATCTGGTAGAAATGATTCNTATGTGGTGGTGTTAGN
AGTAGTGATTGATGAGTAGTAAGGTGTTTCTACTGTAATTACTTGTTGTTGTTATACACGGCAGATTTTGAACTTTGTTC
TGCCTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis