Browse Element(s) Details


Os.53543.1.A1_at

Description gb:AK105592.1
DB_XREF= gi:32990801
TID=Os.53543.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A08, full insert sequence.
FL= gb:AK105592.1 gb:AK073207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3448011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34450OsAffx.23944.2.S1_at11/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34450Os.35524.1.S3_at1/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein
LOC_Os05g34490OsAffx.30677.5.S1_x_at11/115+20365054..20367044hypothetical protein
LOC_Os05g34490OsAffx.30677.1.S1_x_at5/115+20365054..20367044hypothetical protein
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53543.1.A1_at--874--7051Chr05:20362236..20362260 (25 bp)
GTAAGCTACGCCTAGACCTTGGAGA
LOC_Os05g34480
Os.53543.1.A1_at--84--6571Chr05:20362372..20362396 (25 bp)
GATTAACCTGGAATTCTTGCGAGAA
LOC_Os05g34480
Os.53543.1.A1_at--263--2271Chr05:20362439..20362463 (25 bp)
AAATCAGCACCCAAGTTCTGTTTGC
LOC_Os05g34480
Os.53543.1.A1_at--689--6051Chr05:20362475..20362499 (25 bp)
GAGTTGACTGCGCTCTACATACAAT
LOC_Os05g34480
Os.53543.1.A1_at--1105--8011Chr05:20362575..20362599 (25 bp)
GGAGGATGTCCATACTTTCAGAAGT
LOC_Os05g34480
Os.53543.1.A1_at--680--9411Chr05:20362600..20362624 (25 bp)
TCTTTCTCCCCGTTTACTGTTAGAT
LOC_Os05g34480
Os.53543.1.A1_at--542--6451Chr05:20362622..20362646 (25 bp)
GATCAACGGCGAACTTATCCTTGGA
LOC_Os05g34480
Os.53543.1.A1_at--1035--371Chr05:20362658..20362682 (25 bp)
ATCAACTAGGTAGGGCTCTGTCCAC
LOC_Os05g34480
Os.53543.1.A1_at--620--9471Chr05:20362674..20362698 (25 bp)
TCTGTCCACTTTTTGCGTTGAGGTG
LOC_Os05g34480
Os.53543.1.A1_at--13--2391Chr05:20362702..20362726 (25 bp)
AAACTGTGACTCTTCCATGTATCTC
LOC_Os05g34480
Os.53543.1.A1_at--614--6551Chr05:20362858..20362882 (25 bp)
GATTATCCGTATCCTATGATGCTGT
LOC_Os05g34480
Target Sequence 
GTAAGCTACGCCTAGACCTTGGAGAAGATAAGATTAACCTGGAATTCTTGCGAGAAAGATTGGCTAATGTGCATATGGAT
CACTTGGATAGAGGATGCAAATCAGCACCCAAGTTCTGTTTGCAGACTATGTTTGAGTTGACTGCGCTCTACATACAATG
CGAAGAATGTAACACTTTTGATGTCGTGATATAAATAGCTACAATGCTGATGAAGACCATATTACGGAGAGAAGGGAGGA
TGTCCATACTTTCAGAAGTTCTTTCTCCCCGTTTACTGTTAGATCAACGGCGAACTTATCCTTGGAAGAGGATGTACATC
AACTAGGTAGGGCTCTGTCCACTTTTTGCGTTGAGGTGATCAAACTGTGACTCTTCCATGTATCTCTTTTTTGTTTGATG
TCTTTCTTCACGTAAAGGTAGAGTGCAGTGTAATTAACCAGATGAGCTTGGTCAATATTTTGTTGCCAACTTACATGAAA
GTCAGTGAACTCGCTGAACCGATATGGATATGGGCTAGATTATCCGTATCCTATGATGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53543.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis