Browse Element(s) Details


OsAffx.23944.2.S1_at

Description tigr:9633.m03192
TID=OsAffx.23944.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3445011/11AS2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34390OsAffx.27157.1.S1_at9/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34390Os.55243.1.S1_at1/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34400OsAffx.27158.1.S1_at11/115+20309959..20310694hypothetical protein
LOC_Os05g34410Os.47463.1.S1_x_at1/115+20312725..20313656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34410Os.14491.2.S1_x_at1/115+20312725..20313656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34420NANA5+20314032..20316458transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34429NANA5+20317032..20317464NA
LOC_Os05g34440Os.46306.1.S1_x_at3/115+20318570..20322355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34450OsAffx.23944.2.S1_at11/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34450Os.35524.1.S3_at1/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0010199biological_processorgan boundary specification
GO:0048441biological_processpetal development
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23944.2.S1_at--840--4611Chr05:20334640..20334664 (25 bp)
GCGGTGGGTTCGTGAACGACCACCA
LOC_Os05g34450
OsAffx.23944.2.S1_at--1087--1711Chr05:20334619..20334643 (25 bp)
ACCACCAGTTCTCTGCCGTGCAGAT
LOC_Os05g34450
OsAffx.23944.2.S1_at--925--6051Chr05:20334515..20334539 (25 bp)
GAGTTCGGGTACTCGTCCGCCATGG
LOC_Os05g34450
OsAffx.23944.2.S1_at--614--8351Chr05:20334382..20334406 (25 bp)
GGCGGCCTGTTCAGCTTCGATCTTT
LOC_Os05g34450
OsAffx.23944.2.S1_at--902--3391Chr05:20334371..20334395 (25 bp)
CAGCTTCGATCTTTGCATTGGGCAG
LOC_Os05g34450
OsAffx.23944.2.S1_at--776--3071Chr05:20331887..20331911 (25 bp)
AATATCCTAAAGACCCTTAGCTAGG
LOC_Os05g34450
OsAffx.23944.2.S1_at--276--4851Chr05:20331868..20331892 (25 bp)
GCTAGGAGGGCTTGTTTACCACCAC
LOC_Os05g34450
OsAffx.23944.2.S1_at--120--6831Chr05:20331855..20331879 (25 bp)
GTTTACCACCACTTTACATGCAGAA
LOC_Os05g34450
OsAffx.23944.2.S1_at--613--10451Chr05:20331813..20331837 (25 bp)
TTAGCAAATACTGCTTGTTTCATTT
LOC_Os05g34450
OsAffx.23944.2.S1_at--860--6831Chr05:20331797..20331821 (25 bp)
GTTTCATTTGTTCATGTTTATCTCT
LOC_Os05g34450
OsAffx.23944.2.S1_at--405--10371Chr05:20331772..20331796 (25 bp)
TTTTTTCTCCGTTCACAGAGACGAA
LOC_Os05g34450
Target Sequence 
GCGGTGGGTTCGTGAACGACCACCACCAGTTCTCTGCCGTGCAGATGCTGGCCAGGAGCTACGACGGCGAGAGCGCGGTG
GCGAGGCTCGGCGGCGCCGTGAACGTGAGCGGCGGCGGCGGCTACGAGTTCGGGTACTCGTCCGCCATGGGCGGCGCCGG
CGGGCCGATGTCCGGGCTCGGGCCGCTCGGCGGCGGGACGTTCCTCAAGCCCGGCACCGCCGGCGGCGGCGACCGGCCCA
CCGCCGCGCAGTAGCCGCGGCGGCCTGTTCAGCTTCGATCTTTGCATTGGGCAGGTAAATGAATTGAGGAGAATAACCAA
GAGCTGAAGACTAAACTGGTGAATTACTATTAATATCCTAAAGACCCTTAGCTAGGAGGGCTTGTTTACCACCACTTTAC
ATGCAGAAGAAAATGTGTTGTTACATTAGCAAATACTGCTTGTTTCATTTGTTCATGTTTATCTCTTTTTTTCTCCGTTC
ACAGAGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23944.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis