Browse Element(s) Details


OsAffx.27158.1.S1_at

Description tigr:9633.m03188
TID=OsAffx.27158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3440011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34370OsAffx.31069.1.S1_x_at1/115+20283113..20285164retrotransposon protein, putative, unclassified
LOC_Os05g34380OsAffx.14957.1.S1_at11/115+20296312..20297966Cytochrome P450 51, putative
LOC_Os05g34390OsAffx.27157.1.S1_at9/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34390Os.55243.1.S1_at1/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34400OsAffx.27158.1.S1_at11/115+20309959..20310694hypothetical protein
LOC_Os05g34410Os.47463.1.S1_x_at1/115+20312725..20313656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34410Os.14491.2.S1_x_at1/115+20312725..20313656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34420NANA5+20314032..20316458transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34429NANA5+20317032..20317464NA
LOC_Os05g34440Os.46306.1.S1_x_at3/115+20318570..20322355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34450OsAffx.23944.2.S1_at11/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34450Os.35524.1.S3_at1/115+20331707..20335380AS2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27158.1.S1_at--933--8431Chr05:20310033..20310057 (25 bp)
TGGCCAGCCGGAGGTAGAGTCTCCC
LOC_Os05g34400
OsAffx.27158.1.S1_at--503--4971Chr05:20310064..20310397 (25 bp)
GCATCTGCCGTTGAAGGTGGCAAGT
LOC_Os05g34400
OsAffx.27158.1.S1_at--356--7551Chr05:20310396..20310420 (25 bp)
GTGGCGCGACTTGGAGATTCAGCAT
LOC_Os05g34400
OsAffx.27158.1.S1_at--459--691Chr05:20310424..20310448 (25 bp)
ATGAGCTCGGGTGTGAATCACGTGC
LOC_Os05g34400
OsAffx.27158.1.S1_at--1159--3071Chr05:20310439..20310463 (25 bp)
AATCACGTGCGTAATCTATGGACAA
LOC_Os05g34400
OsAffx.27158.1.S1_at--400--751Chr05:20310467..20310491 (25 bp)
ATGTAGATAGGTTCGGGCTGCTCAA
LOC_Os05g34400
OsAffx.27158.1.S1_at--171--9431Chr05:20310479..20310503 (25 bp)
TCGGGCTGCTCAAGAATGTAATACT
LOC_Os05g34400
OsAffx.27158.1.S1_at--145--3731Chr05:20310504..20310610 (25 bp)
CTACTCCTTTGTAAGACCAGCACAT
LOC_Os05g34400
OsAffx.27158.1.S1_at--71--7071Chr05:20310596..20310620 (25 bp)
GTAAGACCAGCACATATACCTCCAG
LOC_Os05g34400
OsAffx.27158.1.S1_at--664--2071Chr05:20310607..20310631 (25 bp)
ACATATACCTCCAGCCTTGAGACCA
LOC_Os05g34400
OsAffx.27158.1.S1_at--164--8411Chr05:20310639..20310663 (25 bp)
GGCCCTGGCCCACTAATCAGTGGCA
LOC_Os05g34400
Target Sequence 
TGGCCAGCCGGAGGTAGAGTCTCCCGGCGGTGCATCTGCCGTTGAAGGTGGCAAGTGGCGCGACTTGGAGATTCAGCATG
GTATGAGCTCGGGTGTGAATCACGTGCGTAATCTATGGACAAGCGATGTAGATAGGTTCGGGCTGCTCAAGAATGTAATA
CTCTACTCCTTTGTAAGACCAGCACATATACCTCCAGCCTTGAGACCAACCTCGGGGCCCTGGCCCACTAATCAGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis