Browse Element(s) Details


OsAffx.27159.1.S1_at

Description tigr:9633.m03198
TID=OsAffx.27159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3451010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein
LOC_Os05g34490OsAffx.30677.5.S1_x_at11/115+20365054..20367044hypothetical protein
LOC_Os05g34490OsAffx.30677.1.S1_x_at5/115+20365054..20367044hypothetical protein
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27159.1.S1_at--97--3751Chr05:20374288..20374312 (25 bp)
CTCACGGTTGCTTCTATTGCCGTTG
LOC_Os05g34510
OsAffx.27159.1.S1_at--109--4911Chr05:20374297..20374321 (25 bp)
GCTTCTATTGCCGTTGGTCAGCTTT
LOC_Os05g34510
OsAffx.27159.1.S1_at--82--6071NONE
GAGTTCTTCTCAAGATGGTAGTGGC
NONE
OsAffx.27159.1.S1_at--656--1311Chr05:20375611..20375635 (25 bp)
AGAGGTTGGTCGATGGTGCCTACTC
LOC_Os05g34510
OsAffx.27159.1.S1_at--835--9171Chr05:20375627..20375651 (25 bp)
TGCCTACTCATGTGGGTGGTCGGCT
LOC_Os05g34510
OsAffx.27159.1.S1_at--804--1051Chr05:20375664..20375688 (25 bp)
AGGGTGGCCCATGGAGCTACCCAAG
LOC_Os05g34510
OsAffx.27159.1.S1_at--413--4551Chr05:20375670..20375694 (25 bp)
GCCCATGGAGCTACCCAAGTGGAGG
LOC_Os05g34510
OsAffx.27159.1.S1_at--35--6471Chr05:20375715..20375739 (25 bp)
GATAATGGCCAATCTGCGGCATCAA
LOC_Os05g34510
OsAffx.27159.1.S1_at--206--3191Chr05:20375724..20375748 (25 bp)
CAATCTGCGGCATCAAGACAGTGTG
LOC_Os05g34510
OsAffx.27159.1.S1_at--908--1051Chr05:20375760..20375784 (25 bp)
AGGTGGCATAGCAGGCCAGTCCCAC
LOC_Os05g34510
OsAffx.27159.1.S1_at--103--3331Chr05:20375782..20375806 (25 bp)
CACTCTTCCCTTCCGCTGGATTTGG
LOC_Os05g34510
Target Sequence 
CTCACGGTTGCTTCTATTGCCGTTGGTCAGCTTTGCGTGGGACGTGGCACACCCATCAAGCCTGGGCAAGGTATGGGAGC
CTTTGTGAAGAAGAGCATAGGAGGGAACAAAGCTGCCTATGATGATGCCCTCCCTGAGAAGAAGAAGGAAGAAGACGTGG
AGAACGCCACTGTGGAGGAGGTGGAGAAATCGGAGCCACCAAAGGTGGAAGAGGACGATGACGGGAGTTCTTCTCAAGAT
GGTAGTGGCAGAGGTTGGTCGATGGTGCCTACTCATGTGGGTGGTCGGCTGGCAAATGGAGCAGGGTGGCCCATGGAGCT
ACCCAAGTGGAGGGCCGTGGTAACGGAAAAGTGGATAATGGCCAATCTGCGGCATCAAGACAGTGTGGTGGTGCATGGAG
GTGGCATAGCAGGCCAGTCCCACTCTTCCCTTCCGCTGGATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis