Browse Element(s) Details


Os.20002.1.S1_at

Description gb:AK099982.1
DB_XREF= gi:32985191
TID=Os.20002.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144D11.23 (B1144D11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129G24, full insert sequence.
FL= gb:AK105731.1 gb:AK099982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3779011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37750Os.28823.1.S1_at10/111+21441604..21442638Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20002.1.S1_at--706--931Chr01:21469397..21469421 (25 bp)
AGGCAAGCAAGATCGTCACATTCAT
LOC_Os01g37790
Os.20002.1.S1_at--864--111Chr01:21469416..21469440 (25 bp)
ATTCATCGAGACCTGCATCAAGACC
LOC_Os01g37790
Os.20002.1.S1_at--145--2451Chr01:21469529..21469553 (25 bp)
AAAATGCGTAGGCTCTCATCTTTCG
LOC_Os01g37790
Os.20002.1.S1_at--955--10431Chr01:21469602..21469626 (25 bp)
TTAGTGGGCCTACAATCGCGTGCAT
LOC_Os01g37790
Os.20002.1.S1_at--1095--4211Chr01:21469628..21469652 (25 bp)
CCGCTCCGACTTGTTTTCAGTAGGA
LOC_Os01g37790
Os.20002.1.S1_at--1113--2651Chr01:21469713..21469737 (25 bp)
AAGCCTGCGCTTGGAGATAGCCTGT
LOC_Os01g37790
Os.20002.1.S1_at--797--591Chr01:21469808..21469832 (25 bp)
ATGCCTGCCATGTTCATATCAGCTA
LOC_Os01g37790
Os.20002.1.S1_at--242--3391Chr01:21469827..21469851 (25 bp)
CAGCTATGTGCTTGTAACCGTGTAA
LOC_Os01g37790
Os.20002.1.S1_at--1132--7431Chr01:21469846..21469870 (25 bp)
GTGTAATTGCGATTATCCGCCTTGG
LOC_Os01g37790
Os.20002.1.S1_at--631--6831Chr01:21469870..21469894 (25 bp)
GTTTCAGTTGAAGCATCCCACAGTG
LOC_Os01g37790
Os.20002.1.S1_at--193--10191Chr01:21469917..21469941 (25 bp)
TATACTGATTGCATCCGATCGTGGT
LOC_Os01g37790
Target Sequence 
AGGCAAGCAAGATCGTCACATTCATCGAGACCTGCATCAAGACCAAAGCCCAGCGGTAAGAAAAAGATCTCAGAGCATGA
TACGGACAAGTCACGGCGGCCACACACAAAGAAATCAGCAACTTCACCGAGGAAAATGCGTAGGCTCTCATCTTTCGCCA
GCAGTCGTAGAGATGGTGCAAGCAGGAAGCCCGTAGTTGGCAAGATTAGTGGGCCTACAATCGCGTGCATCCCGCTCCGA
CTTGTTTTCAGTAGGATCAACGAAGCTTTAAGTTTTCCAGTGAGATCAGAGAACCCTACATGAGGTGTGGGCTGCCAAGC
CTGCGCTTGGAGATAGCCTGTGAACAGAGAGACATATTGCTAGTTTTGCATGTACATTAGCAGCCTTATAATTTTTATAA
AAAAAANTATTAATGCCTGCCATGTTCATATCAGCTATGTGCTTGTAACCGTGTAATTGCGATTATCCGCCTTGGTTTCA
GTTGAAGCATCCCACAGTGGGAGGAAAATAAGCACCTTGAATATACTGATTGCATCCGATCGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis