Browse Element(s) Details


Os.20045.1.S1_at

Description gb:AK102826.1
DB_XREF= gi:32988035
TID=Os.20045.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) SR-rich pre-mRNA splicing activator (OJ1261C08.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109C10, full insert sequence.
FL= gb:AK102826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1636911/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16310NANA3+8982677..8985289retrotransposon protein, putative, LINE subclass
LOC_Os03g16320OsAffx.25106.1.S1_x_at11/113+8985918..8988359hypothetical protein
LOC_Os03g16334Os.37699.2.S1_at11/113+8990657..8995631fringe protein, putative, expressed
LOC_Os03g16334Os.37699.3.S1_x_at11/113+8990657..8995631fringe protein, putative, expressed
LOC_Os03g16350Os.10839.1.S1_at11/113+9001646..9003025DNA-binding protein, putative, expressed
LOC_Os03g16369Os.20045.1.S1_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16369Os.20045.2.S1_x_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16390Os.27177.1.S1_at11/113+9018621..9020552expressed protein
LOC_Os03g16390OsAffx.20425.1.S1_x_at2/113+9018621..9020552expressed protein
LOC_Os03g16400Os.5247.1.S1_at11/113+9026627..9030507expressed protein
LOC_Os03g16400Os.799.2.S1_x_at4/113+9026627..9030507expressed protein
LOC_Os03g16410NANA3+9030906..9031373hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20045.1.S1_at--652--10051Chr03:9008152..9008663 (25 bp)
TAGTTATCTGATTAGCACCATGTGC
LOC_Os03g16369
Os.20045.1.S1_at--291--5091Chr03:9008138..9008162 (25 bp)
GCACCATGTGCACAAGCTTTTTATG
LOC_Os03g16369
Os.20045.1.S1_at--14--2711Chr03:9008125..9008149 (25 bp)
AAGCTTTTTATGTTCCTCAGGGTGA
LOC_Os03g16369
Os.20045.1.S1_at--589--7391Chr03:9008104..9008128 (25 bp)
GTGATTTAATCCACACCTCAACAAC
LOC_Os03g16369
Os.20045.1.S1_at--1154--6611Chr03:9008073..9008097 (25 bp)
GTTGGTAACCTCTTTGATGTTGTGA
LOC_Os03g16369
Os.20045.1.S1_at--260--10771Chr03:9008008..9008032 (25 bp)
TTGAGGTTTGTGTTACTCCCTTCAT
LOC_Os03g16369
Os.20045.1.S1_at--414--9911Chr03:9007995..9008019 (25 bp)
TACTCCCTTCATGACTTGGTTCTGA
LOC_Os03g16369
Os.20045.1.S1_at--1017--8851Chr03:9007940..9007964 (25 bp)
TGATGCTTGCTTAGGGTGCACTGTT
LOC_Os03g16369
Os.20045.1.S1_at--817--8811Chr03:9007916..9007940 (25 bp)
TGTTGAGACCAGACGGAACGCCCAT
LOC_Os03g16369
Os.20045.1.S1_at--486--10751Chr03:9007872..9007896 (25 bp)
TTGAGAGAACACTTCATCTTGCCCT
LOC_Os03g16369
Os.20045.1.S1_at--235--10711Chr03:9007854..9007878 (25 bp)
TTGCCCTCTTATTTTGCGGTTCCAG
LOC_Os03g16369
Target Sequence 
TAGTTATCTGATTAGCACCATGTGCACAAGCTTTTTATGTTCCTCAGGGTGATTTAATCCACACCTCAACAACAACCAAG
TTGGTAACCTCTTTGATGTTGTGAATAGTATCAGAGTACCTGTTTAAAGTTACTGATTCTTGGCTTGAGGTTTGTGTTAC
TCCCTTCATGACTTGGTTCTGATCAAGTAATGAAAATATGTATGTATTTCTNTGATGCTTGCTTAGGGTGCACTGTTGTT
GAGACCAGACGGAACGCCCATAAGCAAATGTTTTGTACTGTTGAGAGAACACTTCATCTTGCCCTCTTATTTTGCGGTTC
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis