Browse Element(s) Details


Os.20079.1.S1_s_at

Description gb:AK073524.1
DB_XREF= gi:32983547
TID=Os.20079.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046I10, full insert sequence.
FL= gb:AK063434.1 gb:AK073524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2517011/11Tropinone reductase homolog At1g07440, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25110OsAffx.31124.1.S1_at11/1111+13807909..13809148hypothetical protein
LOC_Os11g25110Os.34727.1.S1_at1/1111+13807909..13809148hypothetical protein
LOC_Os11g25120NANA11+13809535..13811135transposon protein, putative, Mutator sub-class
LOC_Os11g25130OsAffx.19002.1.S1_at11/1111+13812581..13813549expressed protein
LOC_Os11g25140OsAffx.19003.1.S1_at7/1111+13815714..13816764hypothetical protein
LOC_Os11g25140OsAffx.1198.1.S1_at4/1111+13815714..13816764hypothetical protein
LOC_Os11g25150OsAffx.19004.1.S1_at11/1111+13827892..13828384hypothetical protein
LOC_Os11g25160OsAffx.31125.1.S1_at11/1111+13829257..13830225expressed protein
LOC_Os11g25170Os.20079.1.S1_s_at11/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25170Os.20079.1.S2_at10/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25180Os.47463.1.S1_x_at4/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25180Os.14491.2.S1_x_at3/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25190NANA11+13855170..13856962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25200NANA11+13857349..13857853transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20079.1.S1_s_at--379--6071Chr11:13834139..13834163 (25 bp)
GAGTTAACTGTGTTGCGCCAGGCTT
LOC_Os11g25170
Os.20079.1.S1_s_at--1001--1991Chr11:13834171..13834565 (25 bp)
ACTCCGCTCCTATCTGAATTCGTGG
LOC_Os11g25170
Os.20079.1.S1_s_at--1067--5931Chr11:13834584..13834608 (25 bp)
GAGCAGAGTTCAGCCGTGTTCCCAT
LOC_Os11g25170
Os.20079.1.S1_s_at--199--9351Chr11:13834640..13834664 (25 bp)
TCGCTGGTGGCGTTTCTGTCAATGC
LOC_Os11g25170
Os.20079.1.S1_s_at--523--1771Chr11:13834682..13834706 (25 bp)
ACCGGTCAGGTCATATGCGCCGACG
LOC_Os11g25170
Os.20079.1.S1_s_at--585--7231Chr11:13834710..13834734 (25 bp)
GTCGCTGCCTTTCTTGAAGTGGATG
LOC_Os11g25170
Os.20079.1.S1_s_at--1001--8991Chr11:13834724..13834748 (25 bp)
TGAAGTGGATGGTCCTGATTCCTGA
LOC_Os11g25170
Os.20079.1.S1_s_at--971--2011Chr11:13834756..13834780 (25 bp)
ACTAATTACCTGCTACGTTGAGAGA
LOC_Os11g25170
Os.20079.1.S1_s_at--1058--8491Chr11:13834795..13834819 (25 bp)
TGGAATTTGTCTACCACGTGCCAAC
LOC_Os11g25170
Os.20079.1.S1_s_at--299--5791Chr11:13834935..13834959 (25 bp)
GACGCGTCTAATGTGGGAATTCCCA
LOC_Os11g25170
Os.20079.1.S1_s_at--724--5351Chr11:13834967..13834991 (25 bp)
GAAGATCGATCTGGTTTCTAAGACT
LOC_Os11g25170
Target Sequence 
GAGTTAACTGTGTTGCGCCAGGCTTCATTCGTACTCCGCTCCTATCTGAATTCGTGGAGGGTAACGAGTTGGGGCGAGCA
GAGTTCAGCCGTGTTCCCATGGGCCGTCTCGGTGAACCAGAGGACATCGCATCGCTGGTGGCGTTTCTGTCAATGCCAGC
GTCCTCCTATATNACCGGTCAGGTCATATGCGCCGACGGCGGTCGCTGCCTTTCTTGAAGTGGATGGTCCTGATTCCTGA
AAGATATACTAATTACCTGCTACGTTGAGAGATATGGAAGAATTAATGGAATTTGTCTACCACGTGCCAACCAGGCTAGG
ATTAATTTATCTGGGAAGAGCACAGATTGCTGGGTGTGTCAAAATGATAGAAGTTACNNNNNNNNNNCANCANANTATTT
TAAATAAGTCTGGGAAATTAGGTAGAATAGTTTGTCNGGACGCGTCTAATGTGGGAATTCCCATGGAACAGAAGATCGAT
CTGGTTTCTAAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20079.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis