Browse Element(s) Details


Os.20108.1.S1_a_at

Description gb:AY321106.1
DB_XREF= gi:35187160
TID=Os.20108.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20108 (NCBI UniGene Cluster)
DEF=Oryza sativa EMF protein mRNA, complete cds; alternatively spliced.
PROD=EMF protein
FL= gb:AY321106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g080349/11Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07990Os.46306.1.S1_x_at4/114+4237922..4241014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08000OsAffx.25904.1.S1_at5/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08000OsAffx.21754.1.S1_x_at2/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08000OsAffx.9949.1.S1_at1/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08010OsAffx.25919.1.S1_at11/114+4257843..4258160hypothetical protein
LOC_Os04g08034Os.20108.3.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.6984.1.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.20108.1.S1_a_at9/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034OsAffx.18365.1.S1_at1/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08060OsAffx.3743.1.S1_s_at11/114+4283477..4284505Zinc finger, C2H2 type family protein, expressed
LOC_Os04g08070Os.54504.1.S1_at10/114+4296256..4297594expressed protein
LOC_Os04g08070Os.54504.1.S1_x_at10/114+4296256..4297594expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009960biological_processendosperm development
GO:0010048biological_processvernalization response
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20108.1.S1_a_at--207--8851NONE
TGATCCCAGAAATCGTCTACTTCTG
NONE
Os.20108.1.S1_a_at--273--2431Chr04:4273852..4273876 (25 bp)
AAAACGTCAGTTCATCCATTCTCAT
LOC_Os04g08034
Os.20108.1.S1_a_at--765--9231Chr04:4273866..4274134 (25 bp)
TCCATTCTCATAAGGCACAGCCAAT
LOC_Os04g08034
Os.20108.1.S1_a_at--1017--9771NONE
TAAGGCACAGCCAATGACATTCGAA
NONE
Os.20108.1.S1_a_at--279--9991Chr04:4277069..4277093 (25 bp)
TAGCTGATAGTCACGTACCTTGGGC
LOC_Os04g08034
Os.20108.1.S1_a_at--1110--6971Chr04:4277083..4277107 (25 bp)
GTACCTTGGGCTTGTGAGGCATTCT
LOC_Os04g08034
Os.20108.1.S1_a_at--88--931Chr04:4277099..4277123 (25 bp)
AGGCATTCTCCCGACATCATGGAGA
LOC_Os04g08034
Os.20108.1.S1_a_at--493--10291Chr04:4277129..4277153 (25 bp)
TTTTAGAAAACTCCGCTTTACTATG
LOC_Os04g08034
Os.20108.1.S1_a_at--528--7651Chr04:4277311..4277335 (25 bp)
GGGATGGCGCATGTTTATGATCAAA
LOC_Os04g08034
Os.20108.1.S1_a_at--44--9471Chr04:4277337..4277361 (25 bp)
TCTGGAATCACAGTCTACTCTCTGC
LOC_Os04g08034
Os.20108.1.S1_a_at--543--5131Chr04:4277364..4277388 (25 bp)
GCACAATGGACACCTGCAACAGAAT
LOC_Os04g08034
Target Sequence 
TGATCCCAGAAATCGTCTACTTCTGCAAAAACGTCAGTTCATCCATTCTCATAAGGCACAGCCAATGACATTCGAAGAAG
TTCTCTCAGATAATGATAGTGAAGATGAAGTAGATGATGATATTGCTGATTTGGAAGATAGAAGGATGCTTGATGATTTT
GTTGATGTTACAAAAGATGAGAAGCGCATTATGCACATGTGGAATTCATTTATTCGAAAACAAAGTATACTAGCTGATAG
TCACGTACCTTGGGCTTGTGAGGCATTCTCCCGACATCATGGAGAAGAACTTTTAGAAAACTCCGCTTTACTATGGGGAT
GGCGCATGTTTATGATCAAACTCTGGAATCACAGTCTACTCTCTGCCCGCACAATGGACACCTGCAACAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20108.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis