Browse Element(s) Details


Os.20184.1.S1_at

Description gb:AK099694.1
DB_XREF= gi:32984903
TID=Os.20184.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074F01, full insert sequence.
FL= gb:AK099694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1369411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13660OsAffx.18831.1.S1_at11/1111+7482245..7482718hypothetical protein
LOC_Os11g13670Os.6335.1.S1_at11/1111+7489407..7490920PrMC3, putative, expressed
LOC_Os11g13680NANA11+7497889..7498949expressed protein
LOC_Os11g13694Os.20184.1.S1_at11/1111+7507346..7523741expressed protein
LOC_Os11g13694OsAffx.18832.1.S1_at10/1111+7507346..7523741expressed protein
LOC_Os11g13710NANA11+7539381..7540430hypothetical protein
LOC_Os11g13720Os.57334.1.S1_at11/1111+7547441..7548132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20184.1.S1_at--22--3031Chr11:7521634..7521658 (25 bp)
AATCCACTCGTTGCTGTTGAAGTCC
LOC_Os11g13694
Os.20184.1.S1_at--180--2551Chr11:7521673..7521743 (25 bp)
AACTCGCCTGACATGGATGCTTACT
LOC_Os11g13694
Os.20184.1.S1_at--126--7051Chr11:7521853..7521877 (25 bp)
GTAAACAGGCTCACTACAGCAGTAG
LOC_Os11g13694
Os.20184.1.S1_at--643--5031Chr11:7521871..7521895 (25 bp)
GCAGTAGATCTACCACCAGGATTCA
LOC_Os11g13694
Os.20184.1.S1_at--840--7411Chr11:7522599..7522623 (25 bp)
GTGTTTTCCTACAGAGTCTCATTCG
LOC_Os11g13694
Os.20184.1.S1_at--313--8691Chr11:7523453..7523476 (24 bp)
TGTGCAAGATCTCTTCATCGAGGTA
LOC_Os11g13694
Os.20184.1.S1_at--807--10591Chr11:7523483..7523507 (25 bp)
TTCTGCATTGCGTTTTCCCGAATAA
LOC_Os11g13694
Os.20184.1.S1_at--936--5391Chr11:7523510..7523534 (25 bp)
GAAGCGGCTGGTTTGTTCAGGCTTT
LOC_Os11g13694
Os.20184.1.S1_at--606--8751Chr11:7523611..7523635 (25 bp)
TGTACTTTACCGCTAGATCTTGATA
LOC_Os11g13694
Os.20184.1.S1_at--216--6431Chr11:7523626..7523650 (25 bp)
GATCTTGATAGCTGTCGACTTCATA
LOC_Os11g13694
Os.20184.1.S1_at--115--10811Chr11:7523675..7523699 (25 bp)
TTGTCATCATTGAACTTTACCCCTC
LOC_Os11g13694
Target Sequence 
AATCCACTCGTTGCTGTTGAAGTCCTTTCAAAGTTAATCAACTCGCCTGACATGGATGCTTACTTTGATATTCTTGTGCA
CATGGAAATGAGCCTACATTCAATGGAAGTTGTAAACAGGCTCACTACAGCAGTAGATCTACCACCAGGATTCATTCATG
ACTACATCTCAAACTGTATTCGATCATGTCAAAACATTAAGGATAAATACATGCAAAACAGGCTAGTAAGGCTAGTATGT
GTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATGTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGC
GTTTTCCCGAATAAGAGAAGCGGCTGGTTTGTTCAGGCTTTTAAAATCNTTAGAGTGAAGAAGGATGTATGGTTTAAACA
AAAATTTTCCATGGTGTACATCCATAGTTTTTCATGTTGTACTTTACCGCTAGATCTTGATAGCTGTCGACTTCATAGAN
TATAGCTCTGTCATGTANNAGTTGTCATCATTGAACTTTACCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis