Browse Element(s) Details


Os.2019.2.S1_x_at

Description gb:AU095897
DB_XREF= gi:8858579
DB_XREF=AU095897
CLONE=S11451
TID=Os.2019.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MtN3 (P0454A11.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5046011/11MtN3/saliva family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50430OsAffx.21482.1.S1_at8/111+29279029..29280651hypothetical protein
LOC_Os01g50440Os.20335.1.S1_at11/111+29282530..29283860AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g50450Os.11717.1.S1_a_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.2.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.1.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50460Os.2019.1.S1_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50460Os.2019.2.S1_x_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50470Os.53943.1.S1_at11/111+29304966..29310713regulator of chromosome condensation, putative, expressed
LOC_Os01g50480Os.30572.1.S1_at1/111+29311390..29312863SAM dependent carboxyl methyltransferase family protein
LOC_Os01g50490Os.34136.1.S1_at11/111+29318081..29320130Cytochrome P450 family protein, expressed
LOC_Os01g50500OsAffx.22947.2.S1_x_at10/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.1.S1_x_at9/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.3.S1_x_at5/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.5.S1_x_at4/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.5.S1_at2/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2019.2.S1_x_at--129--4871Chr01:29303191..29303215 (25 bp)
GCTAGTTTCACATGCGAGCGTCTTT
LOC_Os01g50460
Os.2019.2.S1_x_at--273--5891Chr01:29303206..29303230 (25 bp)
GAGCGTCTTTTTCTTTGATCAACCG
LOC_Os01g50460
Os.2019.2.S1_x_at--606--9651Chr01:29303436..29303460 (25 bp)
TCAGAGTCTGTGGAGTTCATGCCGT
LOC_Os01g50460
Os.2019.2.S1_x_at--826--9931Chr01:29303477..29303501 (25 bp)
TACGTTCTTGATGAGCGCCAGTTTT
LOC_Os01g50460
Os.2019.2.S1_x_at--80--4431Chr01:29303493..29303675 (25 bp)
GCCAGTTTTGCATTTTCCCTAATGG
LOC_Os01g50460
Os.2019.2.S1_x_at--1048--9291Chr01:29303666..29303690 (25 bp)
TCCCTAATGGGCTTGGACTTATCCT
LOC_Os01g50460
Os.2019.2.S1_x_at--4--1331Chr01:29303737..29303761 (25 bp)
AGAGGCCAGGATTCATCTGCACCGT
LOC_Os01g50460
Os.2019.2.S1_x_at--231--1791Chr01:29303757..29303781 (25 bp)
ACCGTTGCTGCTCGCATGATCAAAA
LOC_Os01g50460
Os.2019.2.S1_x_at--534--10771Chr01:29303795..29303819 (25 bp)
TTGATCGATCAGCTGGTTTTGCCAT
LOC_Os01g50460
Os.2019.2.S1_x_at--424--9871Chr01:29303858..29303882 (25 bp)
TACAGTTTTGGCTCAGTCTTCACAT
LOC_Os01g50460
Os.2019.2.S1_x_at--969--4731Chr01:29303896..29303920 (25 bp)
GCTGTACTTCAAACTGCATTCTTCA
LOC_Os01g50460
Target Sequence 
GCTAGTTTCACATGCGAGCGTCTTTTTCTTTGATCAACCGCTTCGGCAGCAGTTTGTGGGANCTGTGAGCATGNNTTCGC
TGATCTCCATGTTCGCTTCTCCGTTAGCTGTCATGGGAGTTGTGATTCGGTCAGAGTCTGTGGAGTTCATGCCGTTCTAT
CTGTCACTCTCTACGTTCTTGATGAGCGCCAGTTTTGCATTTTCCCTAATGGGCTTGGACTTATCCTGGGAGCAATGCAN
CTGGCGCTCTACGCTTACTACAGCAGAAAATGGAGAGGCCAGGATTCATCTGCACCGTTGCTGCTCGCATGATCAAAACC
GGAGTGAATGATTGATCGATCAGCTGGTTTTGCCATGGTTTGGATTCTTGAAAGAGTGGGTTTATGGTGAATTGTACAGT
TTTGGCTCAGTCTTCACATGTTGGTACTGGAAGCTGTACTTCAAACTGCATTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2019.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis