Browse Element(s) Details


Os.34136.1.S1_at

Description gb:AK072715.1
DB_XREF= gi:32982738
TID=Os.34136.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flavonoid 3,5-hydroxylase (P0454A11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141G11, full insert sequence.
FL= gb:AK072715.1 gb:AK119264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5049011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50450Os.11717.1.S1_a_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.2.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.1.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50460Os.2019.1.S1_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50460Os.2019.2.S1_x_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50470Os.53943.1.S1_at11/111+29304966..29310713regulator of chromosome condensation, putative, expressed
LOC_Os01g50480Os.30572.1.S1_at1/111+29311390..29312863SAM dependent carboxyl methyltransferase family protein
LOC_Os01g50490Os.34136.1.S1_at11/111+29318081..29320130Cytochrome P450 family protein, expressed
LOC_Os01g50500OsAffx.22947.2.S1_x_at10/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.1.S1_x_at9/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.3.S1_x_at5/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.5.S1_x_at4/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50500OsAffx.22947.5.S1_at2/111+29325758..29330332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g50510NANA1+29337801..29338121hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34136.1.S1_at--494--811Chr01:29319572..29319596 (25 bp)
ATGGTGTACTCGGTTGCCATGCTGC
LOC_Os01g50490
Os.34136.1.S1_at--620--2731Chr01:29319668..29319692 (25 bp)
AAGAAGGCCACACCGCTGGTGGCAA
LOC_Os01g50490
Os.34136.1.S1_at--586--7531Chr01:29319686..29319710 (25 bp)
GTGGCAATACCGACACCTAGGTTGT
LOC_Os01g50490
Os.34136.1.S1_at--488--1751Chr01:29319700..29319724 (25 bp)
ACCTAGGTTGTCTAAGCCTGAACTT
LOC_Os01g50490
Os.34136.1.S1_at--32--10231Chr01:29319728..29319752 (25 bp)
TATTCGTGAGGTCACCTTACCTTAA
LOC_Os01g50490
Os.34136.1.S1_at--747--1871Chr01:29319925..29319949 (25 bp)
ACGAGGGCTCTCATGGTTTCAACGT
LOC_Os01g50490
Os.34136.1.S1_at--101--1192Chr01:29319951..29319975 (25 bp)
AGTAGTGAAGGCTCGAGATCCCATA
LOC_Os01g50490
Os.34136.1.S1_at--1096--10071Chr01:29320013..29320037 (25 bp)
TTTGTTGTGAAACCGCTAAGGCTTC
LOC_Os01g50490
Os.34136.1.S1_at--1134--2911Chr01:29320030..29320054 (25 bp)
AAGGCTTCATATGCGGGTGGGCCCA
LOC_Os01g50490
Os.34136.1.S1_at--910--3971Chr01:29320043..29320067 (25 bp)
CGGGTGGGCCCATATGTCATTTTTT
LOC_Os01g50490
Os.34136.1.S1_at--108--6511Chr01:29320092..29320116 (25 bp)
GATAGGTTTGTACTGGCTCATACTA
LOC_Os01g50490
Target Sequence 
ATGGTGTACTCGGTTGCCATGCTGCTGCAGGCGTTCGACTGGAAGCTGCCGCAGGGCGTGCAGCTTGACCTGTCCGAGAA
GTTTGGGATCGTGATGAAGAAGGCCACACCGCTGGTGGCAATACCGACACCTAGGTTGTCTAAGCCTGAACTTTATTATT
CGTGAGGTCACCTTACCTTAAATAATTCAGCTTAAGCAGATCCAGGCCAGTGCAACAAATTTTATAAGGTGATGGTGTAC
TAGCACGCAGGGGCGGATCCAGAAATAACTAATAGGAGAGATAAAACAAACTATACAAAGCTATAGCCCCCTCTTCTAAT
GGATGTATGACAGAAAATTTTAGTGGGGGCTTTACGAGGGCTCTCATGGTTTCAACGTCAGTAGTGAAGGCTCGAGATCC
CATAGCCCCTATGGTAGATCCGCCACCGCTAGCACGTGATGTTTGTTGTGAAACCGCTAAGGCTTCATATGCGGGTGGGC
CCATATGTCATTTTTTTTTTGTGTATATTACTCTTAGAGAGATAGGTTTGTACTGGCTCATACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis