Browse Element(s) Details


Os.20198.1.S1_at

Description gb:AK103653.1
DB_XREF= gi:32988862
TID=Os.20198.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135E06, full insert sequence.
FL= gb:AK103653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2047011/11Membrane steroid binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20450Os.49215.1.S1_at11/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20450Os.49215.1.S2_at6/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20460Os.54617.1.S1_at11/113+11574287..11577890Guanylate kinase family protein, expressed
LOC_Os03g20470Os.20198.1.S1_at11/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20470Os.54649.1.S1_at1/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20480Os.11156.1.S1_at11/113+11582077..11582711expressed protein
LOC_Os03g20490NANA3+11582947..11587267retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20500Os.5812.1.S1_at11/113+11592064..11593574F-box domain containing protein, expressed
LOC_Os03g20520Os.10805.1.S1_at11/113+11600755..11606684Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0030308biological_processnegative regulation of cell growth
GO:0005886cellular_componentplasma membrane
GO:0005496molecular_functionsteroid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20198.1.S1_at--468--911Chr03:11581163..11581187 (25 bp)
AGGCTCTTTTATGGTCCTCAAGGAC
LOC_Os03g20470
Os.20198.1.S1_at--1078--8091Chr03:11581184..11581208 (25 bp)
GGACCATATTCCTTGTTTGCTGGGA
LOC_Os03g20470
Os.20198.1.S1_at--228--8411Chr03:11581222..11581246 (25 bp)
GGCCCTTGCATTGATGTCGTTTGAC
LOC_Os03g20470
Os.20198.1.S1_at--207--10771Chr03:11581242..11581266 (25 bp)
TTGACCCTATTGACCTCACTGGAGA
LOC_Os03g20470
Os.20198.1.S1_at--376--871Chr03:11581272..11581296 (25 bp)
ATGGCCTTGGTCCAGACGAGCTAGA
LOC_Os03g20470
Os.20198.1.S1_at--702--1371Chr03:11581327..11581351 (25 bp)
AGAGCGGTATCCTACGGTGGGCCAC
LOC_Os03g20470
Os.20198.1.S1_at--429--7472Chr12:924842..925224 (25 bp)
GTGGGCCACCTTGCTTCAGAAAATG
NONE
Os.20198.1.S1_at--232--5311Chr03:11581407..11581431 (25 bp)
GAAGGAATGCTTTACTCCATCGGTT
LOC_Os03g20470
Os.20198.1.S1_at--735--711Chr03:11581485..11581509 (25 bp)
ATGATGCTCTGGTAGGCTCTGTTGC
LOC_Os03g20470
Os.20198.1.S1_at--323--7291Chr03:11581525..11581549 (25 bp)
GTGCGTGACTAATGTACCAGCTTTC
LOC_Os03g20470
Os.20198.1.S1_at--623--2391Chr03:11581611..11581635 (25 bp)
AAACTTGAGCTGTGACTCTCTTGAG
LOC_Os03g20470
Target Sequence 
AGGCTCTTTTATGGTCCTCAAGGACCATATTCCTTGTTTGCTGGGAGGGATGCAACTCGGGCCCTTGCATTGATGTCGTT
TGACCCTATTGACCTCACTGGAGATTTGGATGGCCTTGGTCCAGACGAGCTAGAGGTCTTGCAAGATTGGGAAGATAAGT
TTAAAGAGCGGTATCCTACGGTGGGCCACCTTGCTTCAGAAAATGCAGCGGATGGTAACCACGGTGGCGCAGCTTGATCA
CGAGGAAGGAATGCTTTACTCCATCGGTTTGTCAGTTTCTCTGTTCTTTTTTACTGGATTGCAAGTGGGTAGATCTGATC
ATATGATGCTCTGGTAGGCTCTGTTGCTTGTGTGCTGTTGTCGTGCGTGACTAATGTACCAGCTTTCCCCATCTGCTTTT
ATTTTGGTTTGCAGTGGATGAGGAGGAAATTTTGAGCGACTTGACTAAAAACTTGAGCTGTGACTCTCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis