Browse Element(s) Details


Os.20248.1.S1_at

Description gb:AK112093.1
DB_XREF= gi:37988756
TID=Os.20248.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0691E06.28 (P0691E06.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C01, full insert sequence.
FL= gb:AK112093.1 gb:AK111895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5870011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein
LOC_Os01g58670Os.55436.1.S1_at11/111+34241055..34245283hypothetical protein
LOC_Os01g58670Os.16744.1.S1_at7/111+34241055..34245283hypothetical protein
LOC_Os01g58680Os.33192.1.S1_at10/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58680OsAffx.30558.1.S1_at1/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58690Os.8907.1.S1_at11/111+34253409..34256653Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58700Os.20248.1.S1_at11/111+34257080..34259790expressed protein
LOC_Os01g58710Os.52731.1.S1_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710OsAffx.22699.1.S1_x_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710Os.45161.1.A1_x_at1/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58720Os.31845.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58720OsAffx.3761.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58730Os.33745.1.S1_at11/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58730Os.1385.2.S1_x_at1/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58740Os.26367.1.S1_at11/111+34279035..34282854Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g58750Os.6382.1.S1_at11/111+34283602..34286950expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20248.1.S1_at--742--591Chr01:34257646..34257670 (25 bp)
ATGCCTGGCACCTGGGACATGAAGG
LOC_Os01g58700
Os.20248.1.S1_at--114--1071Chr01:34257624..34257648 (25 bp)
AGGGTGACTCTCTGGATGCATGGAA
LOC_Os01g58700
Os.20248.1.S1_at--1129--7671Chr01:34257584..34257608 (25 bp)
GGGTTCTGCAGCTATAGATTCATGG
LOC_Os01g58700
Os.20248.1.S1_at--470--10111Chr01:34257538..34257562 (25 bp)
TATGTACCTGACAGCCAGGGCTGGT
LOC_Os01g58700
Os.20248.1.S1_at--689--1231Chr01:34257449..34257473 (25 bp)
AGTTGGTCCCATTAGCTCAAAGGCC
LOC_Os01g58700
Os.20248.1.S1_at--512--351Chr01:34257384..34257408 (25 bp)
ATAATGGCTGGAGGCACTGCCGAGT
LOC_Os01g58700
Os.20248.1.S1_at--635--1991Chr01:34257342..34257366 (25 bp)
ACTCCTATGAGAATCCTGGTTGCAA
LOC_Os01g58700
Os.20248.1.S1_at--705--7911Chr01:34257325..34257349 (25 bp)
GGTTGCAACCAGTCACTAGCAATGT
LOC_Os01g58700
Os.20248.1.S1_at--737--6971Chr01:34257226..34257250 (25 bp)
GTACGAACCACCACAAACCTAGAGT
LOC_Os01g58700
Os.20248.1.S1_at--134--5771Chr01:34257201..34257225 (25 bp)
GACGATTTTGTCTAGCCATTTGCAT
LOC_Os01g58700
Os.20248.1.S1_at--626--10271Chr01:34257183..34257207 (25 bp)
TTTGCATGCCCGTTGTACATATCTA
LOC_Os01g58700
Target Sequence 
ATGCCTGGCACCTGGGACATGAAGGGTGACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGA
TTCATGGGACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGGAAAAGGCGAAACA
ATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCAT
TCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCC
TGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTT
TCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTA
CATATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis