Browse Element(s) Details


Os.26367.1.S1_at

Description gb:AK073318.1
DB_XREF= gi:32983341
TID=Os.26367.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycerol-3-phosphate dehydrogenase (P0003D09.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025P14, full insert sequence.
FL= gb:AK073318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5874011/11Glycerol-3-phosphate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58690Os.8907.1.S1_at11/111+34253409..34256653Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58700Os.20248.1.S1_at11/111+34257080..34259790expressed protein
LOC_Os01g58710Os.52731.1.S1_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710OsAffx.22699.1.S1_x_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710Os.45161.1.A1_x_at1/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58720Os.31845.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58720OsAffx.3761.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58730Os.33745.1.S1_at11/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58730Os.1385.2.S1_x_at1/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58740Os.26367.1.S1_at11/111+34279035..34282854Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g58750Os.6382.1.S1_at11/111+34283602..34286950expressed protein
LOC_Os01g58760OsAffx.23844.1.S1_s_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58760OsAffx.23844.1.S1_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58770Os.45990.2.S1_x_at11/111+34294745..34295113hypothetical protein
LOC_Os01g58780Os.37704.1.S1_at11/111+34295592..34297653Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58790Os.11665.1.S1_at10/111+34298035..343033124-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor, putative, expressed
LOC_Os01g58800Os.36776.1.S1_at11/111+34303385..34304139expressed protein
LOC_Os01g58810NANA1+34306996..34310583retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006072biological_processglycerol-3-phosphate metabolism
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26367.1.S1_at--281--951Chr01:34280220..34280350 (25 bp)
AGGAACCATTCAGGGTGTCTCTGCA
LOC_Os01g58740
Os.26367.1.S1_at--640--2671Chr01:34280157..34280181 (25 bp)
AAGCGTAATGCATCCTGAAGCCAAC
LOC_Os01g58740
Os.26367.1.S1_at--307--2491Chr01:34280135..34280159 (25 bp)
AACAGATCTGTTGCACCGGTTGAGA
LOC_Os01g58740
Os.26367.1.S1_at--225--10771Chr01:34280116..34280140 (25 bp)
TTGAGATGTGCCCAATCCTGAAGGC
LOC_Os01g58740
Os.26367.1.S1_at--171--111Chr01:34279374..34279398 (25 bp)
ATTCGATCCTTCAGGCCATAAGAGA
LOC_Os01g58740
Os.26367.1.S1_at--715--4431Chr01:34279289..34279313 (25 bp)
GCCATCTCTTCTTGGTCAACCTAAA
LOC_Os01g58740
Os.26367.1.S1_at--335--3291Chr01:34279256..34279280 (25 bp)
CAAAGCTTAGGCAGTTCTTCCTTTT
LOC_Os01g58740
Os.26367.1.S1_at--1084--7311Chr01:34279224..34279248 (25 bp)
GTGCTAGATATCCTGTAAGCTCTGT
LOC_Os01g58740
Os.26367.1.S1_at--158--1591Chr01:34279207..34279231 (25 bp)
AGCTCTGTGTGCTATTATGCTTGCT
LOC_Os01g58740
Os.26367.1.S1_at--630--8091Chr01:34279143..34279167 (25 bp)
GGACCAAGATCTCAGTTGATTGCTT
LOC_Os01g58740
Os.26367.1.S1_at--626--3571Chr01:34279063..34279087 (25 bp)
CATAGACGTTGTTTTGTGTGATCCA
LOC_Os01g58740
Target Sequence 
AGGAACCATTCAGGGTGTCTCTGCAGTCNATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAAGCGTAATGCATCCTG
AAGCCAACAGATCTGTTGCACCGGTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGGGAACTT
CCTCCTNATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTATGATCCACGTGAAAGAATTGAGATGGCGCAGGGCCA
TTCACTTTACCGGCCATCTCTTCTTGGTCAACCTAAAGGAGATGCCAAAGCTTAGGCAGTTCTTCCTTTTTTTTTTTNGG
TGCTAGATATCCTGTAAGCTCTGTGTGCTATTATGCTTGCTGCTGCTGCTGTTGTTGTAACACTAGTGAGTTCCAGCAAG
GGACCAAGATCTCAGTTGATTGCTTCAAGACTTGTTGAGCTTGTTATGTAGTTTGATTTGTTAAACGCCTGAAATGTGTA
CATAGACGTTGTTTTGTGTGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis