Browse Element(s) Details


OsAffx.23844.1.S1_s_at

Description gb:NM_190940.1
DB_XREF= gi:34908963
GEN=P0003D09.19
TID=OsAffx.23844.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0003D09.19 (P0003D09.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5876011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58710Os.52731.1.S1_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710OsAffx.22699.1.S1_x_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710Os.45161.1.A1_x_at1/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58720Os.31845.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58720OsAffx.3761.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58730Os.33745.1.S1_at11/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58730Os.1385.2.S1_x_at1/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58740Os.26367.1.S1_at11/111+34279035..34282854Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g58750Os.6382.1.S1_at11/111+34283602..34286950expressed protein
LOC_Os01g58760OsAffx.23844.1.S1_s_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58760OsAffx.23844.1.S1_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58770Os.45990.2.S1_x_at11/111+34294745..34295113hypothetical protein
LOC_Os01g58780Os.37704.1.S1_at11/111+34295592..34297653Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58790Os.11665.1.S1_at10/111+34298035..343033124-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor, putative, expressed
LOC_Os01g58800Os.36776.1.S1_at11/111+34303385..34304139expressed protein
LOC_Os01g58810NANA1+34306996..34310583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.3.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820OsAffx.8469.1.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.45173.3.S1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.2.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23844.1.S1_s_at--12--5471Chr01:34289867..34289891 (25 bp)
GAACTGGCATTATTTCGCACGAGCT
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--832--7991Chr01:34289919..34289943 (25 bp)
GGATGTCATTCCAAGCTTTGTGAAT
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--281--2833Chr11:8534230..8534477 (25 bp)
AAGTTCCTCATAAGTTCTCCATGCT
NONE
OsAffx.23844.1.S1_s_at--559--631Chr01:34289992..34290016 (25 bp)
ATGCTAGCTCCGGTTGCTTGATGTT
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--870--4911Chr01:34290007..34290031 (25 bp)
GCTTGATGTTGCGACCTTGTGGGTA
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--113--10831Chr01:34290023..34290047 (25 bp)
TTGTGGGTAATAGCTTTCCGTTGTT
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--1035--10291Chr01:34290037..34290061 (25 bp)
TTTCCGTTGTTATAGCCTGCTCGAA
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--942--2971Chr01:34290218..34290242 (25 bp)
AATGTGGTTTACGTTCTGCAGAATA
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--541--5771Chr01:34290256..34290280 (25 bp)
GACGAGCTGAACTTTATTCCTGATG
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--824--4271Chr01:34290274..34290298 (25 bp)
CCTGATGTTGGTTTCTCTTGCTAGA
LOC_Os01g58760
OsAffx.23844.1.S1_s_at--755--4851Chr01:34290293..34290317 (25 bp)
GCTAGAACTATTTTCGCCAGATACT
LOC_Os01g58760
Target Sequence 
GAACTGGCATTATTTCGCACGAGCTTGATATTCCCAAAATGGTGAATTCAGTGGATGTCATTCCAAGCTTTGTGAATTCT
GCCTCATTGACTGAATGAAACTATCAAGTTCCTCATAAGTTCTCCATGCTAGCTCCGGTTGCTTGATGTTGCGACCTTGT
GGGTAATAGCTTTCCGTTGTTATAGCCTGCTCGAATAAAATGGTGGCTATGATACGAGTAAAAGTCTAAAATTAGTCTAC
CAATGCAGATGTTACTGACTGTAAGTGTTGGGTACTTATGATTTATTATGAAGTGTGATATGTGCTGTACTGTATGATAG
TATTAGAAGAGGCCAATAGTCAGTATGCCAAAATGTGGTTTACGTTCTGCAGAATACTGCAAGCGTCAAGACGAGCTGAA
CTTTATTCCTGATGTTGGTTTCTCTTGCTAGAACTATTTTCGCCAGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23844.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis