Browse Element(s) Details


Os.37704.1.S1_at

Description gb:AK103314.1
DB_XREF= gi:32988523
TID=Os.37704.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0003D09.21 (P0003D09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125G22, full insert sequence.
FL= gb:AK103314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5878011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58720Os.31845.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58720OsAffx.3761.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58730Os.33745.1.S1_at11/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58730Os.1385.2.S1_x_at1/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58740Os.26367.1.S1_at11/111+34279035..34282854Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g58750Os.6382.1.S1_at11/111+34283602..34286950expressed protein
LOC_Os01g58760OsAffx.23844.1.S1_s_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58760OsAffx.23844.1.S1_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58770Os.45990.2.S1_x_at11/111+34294745..34295113hypothetical protein
LOC_Os01g58780Os.37704.1.S1_at11/111+34295592..34297653Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58790Os.11665.1.S1_at10/111+34298035..343033124-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor, putative, expressed
LOC_Os01g58800Os.36776.1.S1_at11/111+34303385..34304139expressed protein
LOC_Os01g58810NANA1+34306996..34310583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.3.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820OsAffx.8469.1.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.45173.3.S1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.2.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58830OsAffx.31753.4.S1_s_at11/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58830OsAffx.31753.1.S1_s_at11/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58830OsAffx.31753.4.S1_at1/111+34319117..34321036hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37704.1.S1_at--87--651Chr01:34297053..34297077 (25 bp)
ATGCATCATTCCCTGGCTGGTTCAG
LOC_Os01g58780
Os.37704.1.S1_at--762--7891Chr01:34297071..34297095 (25 bp)
GGTTCAGCACAATTCTTGTCCAGTT
LOC_Os01g58780
Os.37704.1.S1_at--876--7071Chr01:34297149..34297173 (25 bp)
GTCAACCCACTCTAACGAAGCTATT
LOC_Os01g58780
Os.37704.1.S1_at--497--10691Chr01:34297184..34297208 (25 bp)
TTGCCAGATCTGATGCTGATCCTGT
LOC_Os01g58780
Os.37704.1.S1_at--129--2291Chr01:34297244..34297268 (25 bp)
AAATGCACGGTTCTTTCTCGTTTCT
LOC_Os01g58780
Os.37704.1.S1_at--10--6851Chr01:34297263..34297287 (25 bp)
GTTTCTCTGGCCATTTGATTCACCT
LOC_Os01g58780
Os.37704.1.S1_at--1096--7371Chr01:34297328..34297352 (25 bp)
GTGAGCCTACAGTTCATGACGATGC
LOC_Os01g58780
Os.37704.1.S1_at--321--5771Chr01:34297345..34297369 (25 bp)
GACGATGCTGGCCAGATGACCTATT
LOC_Os01g58780
Os.37704.1.S1_at--776--5831Chr01:34297362..34297386 (25 bp)
GACCTATTCTGAGTGGCATTACGAC
LOC_Os01g58780
Os.37704.1.S1_at--110--8271Chr01:34297376..34297400 (25 bp)
GGCATTACGACTACTGAACTTCCTG
LOC_Os01g58780
Os.37704.1.S1_at--979--2631Chr01:34297514..34297538 (25 bp)
AACCTTGTGTTGCATGTGCCGTTCT
LOC_Os01g58780
Target Sequence 
ATGCATCATTCCCTGGCTGGTTCAGCACAATTCTTGTCCAGTTTGCCGCCATCCACTGCCGTCATCTTCCCACCGTTCAG
GCAGCACCCGTTCATCGTCAACCCACTCTAACGAAGCTATTAGCCATGGGGTTGCCAGATCTGATGCTGATCCTGTTCCT
GTTGCAAGAAGCGACGACAGCAGAAACCATGAAATGCACGGTTCTTTCTCGTTTCTCTGGCCATTTGATTCACCTACTCC
TGATTCCAGTTCCTACACGCACGAANGANGTGTTGGTGAGCCTACAGTTCATGACGATGCTGGCCAGATGACCTATTCTG
AGTGGCATTACGACTACTGAACTTCCTGCAGCAAGACCCCCCAACATATCAGTGTCCACTCCTCTTGGCTTCNACCTCTT
AAAGANGANGTGGATAATTTATGGGTNTCGTGTTNGGTGTNTNANGCTTTCNCCTANAACNAACCTTGTGTTGCATGTGC
CGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis