Browse Element(s) Details


Os.33745.1.S1_at

Description gb:AK060529.1
DB_XREF= gi:32970547
TID=Os.33745.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) beta-1,3-glucanase precursor (P0003D09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-H06, full insert sequence.
FL= gb:AK060529.1 gb:AK099192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5873011/11Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58680Os.33192.1.S1_at10/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58680OsAffx.30558.1.S1_at1/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58690Os.8907.1.S1_at11/111+34253409..34256653Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58700Os.20248.1.S1_at11/111+34257080..34259790expressed protein
LOC_Os01g58710Os.52731.1.S1_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710OsAffx.22699.1.S1_x_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710Os.45161.1.A1_x_at1/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58720Os.31845.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58720OsAffx.3761.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58730Os.33745.1.S1_at11/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58730Os.1385.2.S1_x_at1/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58740Os.26367.1.S1_at11/111+34279035..34282854Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g58750Os.6382.1.S1_at11/111+34283602..34286950expressed protein
LOC_Os01g58760OsAffx.23844.1.S1_s_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58760OsAffx.23844.1.S1_at11/111+34289473..34290396bZIP transcription factor family protein, expressed
LOC_Os01g58770Os.45990.2.S1_x_at11/111+34294745..34295113hypothetical protein
LOC_Os01g58780Os.37704.1.S1_at11/111+34295592..34297653Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58790Os.11665.1.S1_at10/111+34298035..343033124-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor, putative, expressed
LOC_Os01g58800Os.36776.1.S1_at11/111+34303385..34304139expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33745.1.S1_at--1147--8351Chr01:34276745..34276769 (25 bp)
GGCGGTGTCACGTACACCAACATGT
LOC_Os01g58730
Os.33745.1.S1_at--929--4691Chr01:34276592..34276616 (25 bp)
GCGGCGTACAGCAACAACCTGGTGC
LOC_Os01g58730
Os.33745.1.S1_at--591--891Chr01:34276531..34276555 (25 bp)
AGGCCGTGGAGACGTACATCTTCGC
LOC_Os01g58730
Os.33745.1.S1_at--433--4671Chr01:34276477..34276501 (25 bp)
GCGTGGAGCAGAACTTCGGCCTGTT
LOC_Os01g58730
Os.33745.1.S1_at--534--2111Chr01:34276444..34276468 (25 bp)
ACATGAGCGCGGTCTACCACGTCGA
LOC_Os01g58730
Os.33745.1.S1_at--695--5691Chr01:34276421..34276445 (25 bp)
GACTTCTCGGCGTGATCATCTTAAT
LOC_Os01g58730
Os.33745.1.S1_at--1082--411Chr01:34276407..34276431 (25 bp)
ATCATCTTAATCAGGCAGCGACGGC
LOC_Os01g58730
Os.33745.1.S1_at--453--7571Chr01:34276380..34276404 (25 bp)
GGGCGACGCTCCATGGATTTGGACT
LOC_Os01g58730
Os.33745.1.S1_at--107--7951Chr01:34276366..34276390 (25 bp)
GGATTTGGACTCATCGTGTGCATGA
LOC_Os01g58730
Os.33745.1.S1_at--649--9371Chr01:34276275..34276299 (25 bp)
TCGATATGTATATGATTCCGCTGCA
LOC_Os01g58730
Os.33745.1.S1_at--1105--3131Chr01:34276241..34276265 (25 bp)
AATTACCAGCATTCACCTGTTTCTC
LOC_Os01g58730
Target Sequence 
GGCGGTGTCACGTACACCAACATGTTCGACGCCATCCTGGACGCGGTGTACGCGGCGCTGGAGAAGGCGGGCGGGCAGGG
CCTGGAGGTGGTGGTGTCGGAGACCGGGTGGCCGTCGGGCGGCGGCGGGGCCGGCGCCAGCGTGGAGAACGCGGCGGCGT
ACAGCAACAACCTGGTGCGCCACGTCGGGCGCGGCACGCCGCGGCGGCCCGGGAAGGCCGTGGAGACGTACATCTTCGCC
ATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGAACTTCGGCCTGTTCCACCCGGACATGAGCGCGGTCTACCA
CGTCGACTTCTCGGCGTGATCATCTTAATCAGGCAGCGACGGCGGGGGCGACGCTCCATGGATTTGGACTCATCGTGTGC
ATGAGTTACTTAAGTACCAATTTTAGGAAGTTAGTAGTATGATTACAATATTGGACAAAGATATTTGACATCGATATGTA
TATGATTCCGCTGCATTTCTGATTAATTACCAGCATTCACCTGTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis