Browse Element(s) Details


Os.20258.1.S1_at

Description gb:AK107784.1
DB_XREF= gi:32992993
TID=Os.20258.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-C10, full insert sequence.
FL= gb:AK107784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4215011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42100OsAffx.7861.1.S1_x_at5/1112+26071350..26075120hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os12g42140Os.27662.1.S1_at11/1112+26090409..26093235G-patch domain containing protein, expressed
LOC_Os12g42150Os.20258.1.S1_at11/1112+26094981..26097138transducin family protein, putative, expressed
LOC_Os12g42160OsAffx.20085.1.S1_x_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42160Os.47736.1.S1_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42170NANA12+26104714..26105331hypothetical protein
LOC_Os12g42180Os.10241.1.S1_at11/1112+26105882..26108174ribosomal protein L14 containing protein, expressed
LOC_Os12g42190Os.19899.1.S1_x_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190Os.19899.2.S1_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190OsAffx.31549.2.S1_x_at1/1112+26121447..26125141transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20258.1.S1_at--1017--1811Chr12:26096130..26096154 (25 bp)
ACGCGGTATTACTGCTTGGGATCTT
LOC_Os12g42150
Os.20258.1.S1_at--1048--991Chr12:26096183..26096207 (25 bp)
AGGATGCTCATTCAACTCGTGTGAA
LOC_Os12g42150
Os.20258.1.S1_at--963--5551Chr12:26096205..26096229 (25 bp)
GAAAGGGATTGTTGTCTTCGACGAC
LOC_Os12g42150
Os.20258.1.S1_at--918--7951Chr12:26096239..26096263 (25 bp)
GGATCTGAACTGTGCAACCTAATTG
LOC_Os12g42150
Os.20258.1.S1_at--556--2911Chr12:26096289..26096313 (25 bp)
AAGGATCTGGGATGCTCGGATGATT
LOC_Os12g42150
Os.20258.1.S1_at--630--2931Chr12:26096358..26096382 (25 bp)
AAGGCTGACTTGTCTTGCGGGATCA
LOC_Os12g42150
Os.20258.1.S1_at--994--8411Chr12:26096934..26096958 (25 bp)
GGCCGTGGTACCAATTTTGTACTCT
LOC_Os12g42150
Os.20258.1.S1_at--698--4231Chr12:26097007..26097031 (25 bp)
CCGAGGAGCTCGATGTATGGGACAT
LOC_Os12g42150
Os.20258.1.S1_at--31--6771Chr12:26097047..26097071 (25 bp)
GTTATGCATCACCATAGTCTGGCTT
LOC_Os12g42150
Os.20258.1.S1_at--255--4891Chr12:26097068..26097092 (25 bp)
GCTTGAGGGCCTAAACTGCTTAATG
LOC_Os12g42150
Os.20258.1.S1_at--375--5171Chr12:26097098..26097122 (25 bp)
GCAAGCGCATGGTTCTATTGTATCA
LOC_Os12g42150
Target Sequence 
ACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTANATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAG
GGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCNGCCTCATCAGATGGTATAATA
AGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGNCTACTCCATTAGCAGAGGCTAANACAAAAGCAAGGCTGACTTG
TCTTGCGGGATCATCATTGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCG
TGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCG
ATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATG
CAAGCGCATGGTTCTATTGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis