Browse Element(s) Details


Os.20303.1.S1_s_at

Description gb:CR289599
DB_XREF= gi:44676165
DB_XREF=CR289599
CLONE=y668h08p3
TID=Os.20303.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20303 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_195323.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1402011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein
LOC_Os03g14030OsAffx.12851.1.S1_at11/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14030Os.49709.1.S1_at10/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14040Os.32492.1.S1_at10/113+7594971..7597955expressed protein
LOC_Os03g14050Os.12241.1.S1_at11/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14050Os.12241.2.S1_at10/113+7605508..7608663SCUTL1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20303.1.S1_s_at--1043--7971Chr03:7585645..7585669 (25 bp)
GGATGCTGGGCAGGCTTCAGAAATT
LOC_Os03g14020
Os.20303.1.S1_s_at--916--1231Chr03:7585673..7585697 (25 bp)
AGTTCCTTCGATATTATTGTTGCAA
LOC_Os03g14020
Os.20303.1.S1_s_at--1126--6651Chr03:7585691..7586173 (25 bp)
GTTGCAAGTGACTGCACATTTTTCA
LOC_Os03g14020
Os.20303.1.S1_s_at--645--391Chr03:7586183..7586207 (25 bp)
ATCAGAGCCTTGCACGGGTTGTCAA
LOC_Os03g14020
Os.20303.1.S1_s_at--141--891Chr03:7586262..7586286 (25 bp)
AGGCGATTCACTCAGCAAATTCCTA
LOC_Os03g14020
Os.20303.1.S1_s_at--991--1351Chr03:7586325..7586349 (25 bp)
AGAGAAGTATGATCCCACTGTATGG
LOC_Os03g14020
Os.20303.1.S1_s_at--617--6291Chr03:7586374..7586398 (25 bp)
GATGATAACAGATCCTGGCCCAACT
LOC_Os03g14020
Os.20303.1.S1_s_at--906--6371Chr03:7586384..7586408 (25 bp)
GATCCTGGCCCAACTACAATGAAGA
LOC_Os03g14020
Os.20303.1.S1_s_at--691--5091Chr03:7586409..7586433 (25 bp)
GCACTGCTACCCTCTATTGGTTAGA
LOC_Os03g14020
Os.20303.1.S1_s_at--1119--6771Chr03:7586454..7586478 (25 bp)
GTTACCTCCAGACATTTCGTTTGAT
LOC_Os03g14020
Os.20303.1.S1_s_at--184--2711Chr03:7586505..7586529 (25 bp)
AAGCTTTAGCTAGTCTATGTTGTAA
LOC_Os03g14020
Target Sequence 
GGATGCTGGGCAGGCTTCAGAAATTATTAGTTCCTTCGATATTATTGTTGCAAGTGACTGCACATTTTTCANNNAATTCC
ATCAGAGCCTTGCACGGGTTGTCAANTCCTTGTTGAAGCATTCAGANACCTCACAGGCCATTTTCCTGAGCCNAAAGAGA
GGCGATTCACTCAGCAAATTCCTAGAAGTAATTNAAAAGAATGGTTTGTCTTGTGAGTTGATAGAGAAGTATGATCCCAC
TGTATGGNATATGCACNAAAAATATGTATCGGATGATAACAGATCCTGGCCCAACTACAATGAAGAGCACTGCTACCCTC
TATTGGTTAGAATTAATAGTCACAGCAAATAGTTACCTCCAGACATTTCGTTTGATCTATGATGGGTTCATTTGTGATGT
AAAAGCTTTAGCTAGTCTATGTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20303.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis