Browse Element(s) Details


Os.20321.1.S1_at

Description gb:AK101201.1
DB_XREF= gi:32986410
TID=Os.20321.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030N09, full insert sequence.
FL= gb:AK101201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4982010/11Lipid phosphate phosphatase 2, putative, expressed
LOC_Os04g443701/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49830Os.8019.1.S1_at11/111+28946388..28947953DNA-binding protein RAV1, putative, expressed
LOC_Os01g49840OsAffx.23732.1.S1_at11/111+28949350..28949637hypothetical protein
LOC_Os01g49849NANA1+28952420..28952696NA
LOC_Os01g49860OsAffx.11537.1.S1_at11/111+28956419..28957326hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20321.1.S1_at--69--10851Chr01:28934466..28934490 (25 bp)
TTGGGTATCCGGAAGTATGCCTGAC
LOC_Os01g49820
Os.20321.1.S1_at--49--551Chr01:28934472..28934496 (25 bp)
ATCCGGAAGTATGCCTGACAGTAGA
LOC_Os01g49820
Os.20321.1.S1_at--334--6911Chr01:28934480..28934504 (25 bp)
GTATGCCTGACAGTAGATGGTCACA
LOC_Os01g49820
Os.20321.1.S1_at--122--10051Chr01:28934493..28934517 (25 bp)
TAGATGGTCACATTGTCGCTTGGCT
LOC_Os01g49820
Os.20321.1.S1_at--940--7091Chr01:28934499..28934523 (25 bp)
GTCACATTGTCGCTTGGCTTATCAT
LOC_Os01g49820
Os.20321.1.S1_at--1145--3072Chr01:28934574..28934598 (25 bp)
AATAATGGCAGGTGCCCTCTCTGCA
LOC_Os01g49820
Os.20321.1.S1_at--114--1051Chr01:28934583..28934607 (25 bp)
AGGTGCCCTCTCTGCATATAAGAGA
LOC_Os01g49820
Os.20321.1.S1_at--1017--6871Chr01:28934953..28934977 (25 bp)
GTATAGTGTACAGCTTTCCTTATTT
LOC_Os01g49820
Os.20321.1.S1_at--103--7451Chr01:28934958..28934982 (25 bp)
GTGTACAGCTTTCCTTATTTTTTGC
LOC_Os01g49820
Os.20321.1.S1_at--225--103711Chr07:29089033..29089058 (24 bp)
TTTTTTCTTGCTATATTCAATGAAT
NONE
Os.20321.1.S1_at--905--5111NONE
GCACATTCTTGTGCTAGTTCCTTCC
NONE
Target Sequence 
TTGGGTATCCGGAAGTATGCCTGACAGTAGATGGTCACATTGTCGCTTGGCTTATCATACAGAATAGGGTTTGGACCTCT
GGCCGGCTTGTGACCAGGGGGTTGGAAAAATAATGGCAGGTGCCCTCTCTGCATATAAGAGAAGATGATACGGCTTTGCA
CCTCGTCGCCGAGTGCAGGTATACGAGAAGGATTTGAAACCTCGTTGCGACATGGGTAGGGTTTCACCAGCTAGAACTCC
GACGCTGGGGGTGGTGCAACCGGTCAAAGATTGGTGGAAAATACTGGCCTCTGTGTCTGGCGTCCCTAAGAAGGGACTCT
GCACCCTGATTCTACTCATCGTATGGGAAGTTTGGAAGGTGCGAAATAGGAGGATATTTGATTATAAGGAAGCCACAACC
TCGTATCTCCTTTCAAAGATAAAAGAAGAGGCTGGCATGTGGGCCTTGGCAGGCGCCAAGTGTCTTGGAGAGATCATCCC
GCAGTTTGTATAGTGTACAGCTTTCCTTATTTTTTGCTTTTTCTTTACCCTTAGGGGTTGTATTTTTTTTCTTGCTATAT
TCAATGAATAAGCACATTCTTGTGCTAGTTCCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis