Browse Element(s) Details


Os.20327.1.S1_at

Description gb:AK062354.1
DB_XREF= gi:32972372
TID=Os.20327.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-G08, full insert sequence.
FL= gb:AK062354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4408011/11ubiquitin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44040OsAffx.28093.1.S1_at11/116+26562337..26565281DOMON domain containing protein, expressed
LOC_Os06g44050Os.27118.1.A1_at11/116+26568423..26571448Methyladenine glycosylase family protein, expressed
LOC_Os06g44060Os.6185.1.S1_at11/116+26574131..26578687Phospholipase D. Active site motif family protein, expressed
LOC_Os06g44070NANA6+26580705..26582751retrotransposon, putative, centromere-specific
LOC_Os06g44080Os.20327.1.S1_at11/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44080OsAffx.28094.1.S1_at4/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44090OsAffx.15918.1.S1_at11/116+26588785..26589682hypothetical protein
LOC_Os06g44100OsAffx.15919.1.S1_x_at11/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44100OsAffx.11941.1.S1_x_at2/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44110OsAffx.5770.1.S1_at1/116+26594256..26595141retrotransposon protein, putative, unclassified
LOC_Os06g44120NANA6+26606364..26606890retrotransposon protein, putative, unclassified
LOC_Os06g44130NANA6+26607733..26609425retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0009733biological_processresponse to auxin stimulus
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20327.1.S1_at--440--1191Chr06:26586904..26586928 (25 bp)
AGTAGATGTAGTTTCCATGCCCGCA
LOC_Os06g44080
Os.20327.1.S1_at--1029--6271Chr06:26586908..26586932 (25 bp)
GATGTAGTTTCCATGCCCGCATTAT
LOC_Os06g44080
Os.20327.1.S1_at--800--9231Chr06:26586917..26586941 (25 bp)
TCCATGCCCGCATTATCTCTAAAGG
LOC_Os06g44080
Os.20327.1.S1_at--411--3771Chr06:26586933..26586957 (25 bp)
CTCTAAAGGGAGAAGCATATTTGCT
LOC_Os06g44080
Os.20327.1.S1_at--416--6951Chr06:26586973..26586997 (25 bp)
GTAGTTGCTGCAGACTTATAGCTAT
LOC_Os06g44080
Os.20327.1.S1_at--958--5031Chr06:26586982..26587006 (25 bp)
GCAGACTTATAGCTATATTTGGTAG
LOC_Os06g44080
Os.20327.1.S1_at--930--4631Chr06:26587024..26587048 (25 bp)
GCGATTGGCGCATTGTGTATTGGAA
LOC_Os06g44080
Os.20327.1.S1_at--712--8212Chr06:26587045..26587069 (25 bp)
GGAATCAATTGTCATCTGTACTGGA
LOC_Os06g44080
Os.20327.1.S1_at--452--3171Chr06:26587051..26587075 (25 bp)
AATTGTCATCTGTACTGGAAAGGAA
LOC_Os06g44080
Os.20327.1.S1_at--642--3731Chr06:26587085..26587109 (25 bp)
CTAAGTTAAGCAGTAGTTTATCAAT
LOC_Os06g44080
Os.20327.1.S1_at--944--9731Chr06:26587105..26587129 (25 bp)
TCAATTGCCATTCTATTTCTGCTGC
LOC_Os06g44080
Target Sequence 
AGTAGATGTAGTTTCCATGCCCGCATTATCTCTAAAGGGAGAAGCATATTTGCTATTCNATTTCTATCTGTAGTTGCTGC
AGACTTATAGCTATATTTGGTAGGNTTATTGAAGTNCTATGCGATTGGCGCATTGTGTATTGGAATCAATTGTCATCTGT
ACTGGAAAGGAAATATTGGAACTAAGTTAAGCAGTAGTTTATCAATTGCCATTCTATTTCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis