Browse Element(s) Details


Os.20329.1.S1_at

Description gb:AK073413.1
DB_XREF= gi:32983436
TID=Os.20329.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041G22, full insert sequence.
FL= gb:AK073413.1 gb:AK104040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3848011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38460Os.54784.1.S1_at11/115+22470121..22477882Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g38470Os.50007.1.S1_at11/115+22484929..22487785expressed protein
LOC_Os05g38470Os.50007.1.S2_at11/115+22484929..22487785expressed protein
LOC_Os05g38480Os.20329.1.S1_at11/115+22490960..22494506Kinesin motor domain containing protein, expressed
LOC_Os05g38490NANA5+22497152..22503258Growth regulator protein, putative
LOC_Os05g38500OsAffx.27225.1.S1_s_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38500OsAffx.27225.1.S1_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38510OsAffx.27226.1.S1_at11/115+22510059..22512985hypothetical protein
LOC_Os05g38520Os.9260.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38520Os.57302.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38530Os.38581.1.S1_s_at11/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38530Os.57477.1.S1_x_at1/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20329.1.S1_at--950--7771Chr05:22493430..22493454 (25 bp)
GGTGCTACACCCCTTGATAAATTTA
LOC_Os05g38480
Os.20329.1.S1_at--196--10231Chr05:22493453..22493477 (25 bp)
TATTGCACTTGGCTCTAACCTGAAG
LOC_Os05g38480
Os.20329.1.S1_at--126--8271Chr05:22493845..22493869 (25 bp)
GGCAGAGTACATTCTTGAGCTTCGA
LOC_Os05g38480
Os.20329.1.S1_at--336--5351Chr05:22493870..22493894 (25 bp)
GAAGATTCGCCCAGACCATTTAAAT
LOC_Os05g38480
Os.20329.1.S1_at--1016--3351Chr05:22494188..22494212 (25 bp)
CACCGAACTCTACCACTTTGAAGAT
LOC_Os05g38480
Os.20329.1.S1_at--32--1271Chr05:22494209..22494233 (25 bp)
AGATGCTGGCTCATATTAACGGTCA
LOC_Os05g38480
Os.20329.1.S1_at--730--10831Chr05:22494254..22494278 (25 bp)
TTGTGATTATCAGCCAGGTCTGCCG
LOC_Os05g38480
Os.20329.1.S1_at--187--8991Chr05:22494280..22494304 (25 bp)
TGAATCAAGTTAGCTCCCTCCTGTA
LOC_Os05g38480
Os.20329.1.S1_at--538--9311Chr05:22494294..22494318 (25 bp)
TCCCTCCTGTATTGCCGAATTTAAG
LOC_Os05g38480
Os.20329.1.S1_at--647--6971Chr05:22494334..22494358 (25 bp)
GTACCATCCATGATTCCTTGGGTGT
LOC_Os05g38480
Os.20329.1.S1_at--1005--5531Chr05:22494437..22494461 (25 bp)
GAAACCGCCGTTTAATTTGAGCTGA
LOC_Os05g38480
Target Sequence 
GGTGCTACACCCCTTGATAAATTTATTGCACTTGGCTCTAACCTGAAGGAATCTCTTATTCAGCAATACCTTGATTTCTT
AAATGTTGCAAACAAGGAAGAACTACAGAAGTTGAAAGGCATTGGTGAAAGGAGGGCAGAGTACATTCTTGAGCTTCGAG
AAGATTCGCCCAGACCATTTAAATCTCTTTCAGATTTGGGAAATATTGGTCTATCATCAAAACAGATACAAGATATTTTG
TGCAAGACAGCGACTGGAANCTTCAAATGATCACCGGAATGGAAATGCCACCGAACTCTACCACTTTGAAGATGCTGGCT
CATATTAACGGTCAGATTGTTGTGGGCTATTGACTTGTGATTATCAGCCAGGTCTGCCGCTGAATCAAGTTAGCTCCCTC
CTGTATTGCCGAATTTAAGCAATCTGTAGTTTGTGTACCATCCATGATTCCTTGGGTGTAATTGTAGCTGTAGTCATCTG
ATGTACTACTAGAGTATGGAGCAATGGTTGCTCCTCTCTGTTGTAGATTTTCTCCGAGAAACCGCCGTTTAATTTGAGCT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis