Browse Element(s) Details


Os.20425.1.S1_at

Description gb:AK103919.1
DB_XREF= gi:32989128
TID=Os.20425.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A09, full insert sequence.
FL= gb:AK103919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2570011/11UDP-glucose 6-dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25670OsAffx.31881.1.S1_at10/1112+14871873..14872340hypothetical protein
LOC_Os12g25680OsAffx.19826.1.S1_at10/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25680OsAffx.19826.2.S1_at1/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.1.S1_at11/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_x_at10/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_at7/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.10473.1.S1_at1/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed
LOC_Os12g25720Os.54701.1.S1_at10/1112+14909584..14913966expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003979molecular_functionUDP-glucose 6-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20425.1.S1_at--207--4971Chr12:14892979..14893003 (25 bp)
GCATCTACGACCCACAGGTAACTGA
LOC_Os12g25700
Os.20425.1.S1_at--1071--9851Chr12:14892984..14893008 (25 bp)
TACGACCCACAGGTAACTGAAGATC
LOC_Os12g25700
Os.20425.1.S1_at--886--7831Chr12:14892995..14893019 (25 bp)
GGTAACTGAAGATCAGATCCAGCGG
LOC_Os12g25700
Os.20425.1.S1_at--58--10291Chr12:14893024..14893048 (25 bp)
TTTCCATGGCCAAGTTTGATTGGGA
LOC_Os12g25700
Os.20425.1.S1_at--1037--3471Chr12:14893028..14893052 (25 bp)
CATGGCCAAGTTTGATTGGGACCAC
LOC_Os12g25700
Os.20425.1.S1_at--128--1811Chr12:14893051..14893075 (25 bp)
ACCCAAGGCACCTGCAGCCAACTAG
LOC_Os12g25700
Os.20425.1.S1_at--308--3411Chr12:14893067..14893091 (25 bp)
GCCAACTAGCCCCACGGCTTTTAAG
LOC_Os12g25700
Os.20425.1.S1_at--16--9971Chr12:14893073..14893097 (25 bp)
TAGCCCCACGGCTTTTAAGCAGGTG
LOC_Os12g25700
Os.20425.1.S1_at--589--4191Chr12:14893076..14893100 (25 bp)
CCCCACGGCTTTTAAGCAGGTGAGT
LOC_Os12g25700
Os.20425.1.S1_at--427--4891Chr12:14893083..14893107 (25 bp)
GCTTTTAAGCAGGTGAGTGTGGTCT
LOC_Os12g25700
Os.20425.1.S1_at--255--8671Chr12:14893100..14893124 (25 bp)
TGTGGTCTGGGATGCGTATGAGGCC
LOC_Os12g25700
Target Sequence 
GCATCTACGACCCACAGGTAACTGAAGATCAGATCCAGCGGGACCTTTCCATGGCCAAGTTTGATTGGGACCACCCAAGG
CACCTGCAGCCAACTAGCCCCACGGCTTTTAAGCAGGTGAGTGTGGTCTGGGATGCGTATGAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis