Browse Element(s) Details


Os.20425.2.S1_x_at

Description gb:AK099096.1
DB_XREF= gi:32984305
TID=Os.20425.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023C02, full insert sequence.
FL= gb:AK099096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2570010/11UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g256901/11UDP-glucose 6-dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25670OsAffx.31881.1.S1_at10/1112+14871873..14872340hypothetical protein
LOC_Os12g25680OsAffx.19826.1.S1_at10/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25680OsAffx.19826.2.S1_at1/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.1.S1_at11/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_x_at10/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_at7/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.10473.1.S1_at1/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed
LOC_Os12g25720Os.54701.1.S1_at10/1112+14909584..14913966expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003979molecular_functionUDP-glucose 6-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20425.2.S1_x_at--915--3211Chr12:14893127..14893151 (25 bp)
CAAGGGAGCCCATGGACTGTGCATC
LOC_Os12g25700
Os.20425.2.S1_x_at--654--2371Chr12:14893212..14893236 (25 bp)
AAACCTGCATTTGTCTTCGATGGGC
LOC_Os12g25700
Os.20425.2.S1_x_at--273--31Chr12:14893269..14893293 (25 bp)
ATTGGCTTCATTGTCTACTCTATCG
LOC_Os12g25700
Os.20425.2.S1_x_at--870--592Chr12:14893323..14893347 (25 bp)
ATGCCCGCGGTTGCATAATTCTGAA
LOC_Os12g25700
Os.20425.2.S1_x_at--1005--1771Chr12:14893400..14893424 (25 bp)
ACCGGTCGACCACTATTTTCTGTAG
LOC_Os12g25700
Os.20425.2.S1_x_at--907--2131Chr12:14893441..14893465 (25 bp)
ACAGCTACCATTTTCTCAGTCGTAA
LOC_Os12g25700
Os.20425.2.S1_x_at--703--1211Chr12:14893494..14893518 (25 bp)
AGTTTTCATGTTTGCAGCTTTGCGC
LOC_Os12g25700
Os.20425.2.S1_x_at--95--1571Chr12:14893509..14893533 (25 bp)
AGCTTTGCGCCTTTGTAGATCTGAA
LOC_Os12g25700
Os.20425.2.S1_x_at--340--1131Chr12:14893556..14893580 (25 bp)
AGTGCCACCCAAAATACCTCTTGTA
LOC_Os12g25700
Os.20425.2.S1_x_at--71--1751Chr12:14893571..14893595 (25 bp)
ACCTCTTGTATCACATGAACTTCTT
LOC_Os12g25700
Os.20425.2.S1_x_at--741--1611NONE
AGCTGATTTATTCTCGTATTTCAAA
NONE
Target Sequence 
CAAGGGAGCCCATGGACTGTGCATCCTCACTGAGTGGGACGAGTTCAAGACCTTGGACTACCANNGGATCTTTGACAACA
TGCAGAAACCTGCATTTGTCTTCGATGGGCGCAATGTGGTCGATCCTGAGAAGCTCAGGGAGATTGGCTTCATTGTCTAC
TCTATCGGCAAGCCGCTTGATGCATGGCTCAAAGACATGCCCGCGGTTGCATAATTCTGAATCCCCACCTGGAGCGCTCT
GCTGGAGCTGAAGAAATTCGATAAGGAAACAGAACCGGTCGACCACTATTTTCTGTAGTCTGTTTTTGCAGGAGACAGCT
ACCATTTTCTCAGTCGTAAGTTGAATATCTGTTAGTATCTTTGTCGAAGTTTTCATGTTTGCAGCTTTGCGCCTTTGTAG
ATCTGAAATCCTCAAGCCTCTGCTCTAAGAGTGCCACCCAAAATACCTCTTGTATCACATGAACTTCTTATAGCTGATTT
ATTCTCGTATTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20425.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis