Browse Element(s) Details

Os.20514.1.S1_x_at

Description

gb:AK063422.1
DB_XREF= gi:32973440
TID=Os.20514.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cysteine proteinase (P0434A03.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C06, full insert sequence.
FL= gb:AK063422.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g29760	11/11	Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030	1/11	Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g01800	1/11	Papain family cysteine protease containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g29720	OsAffx.28663.1.S1_at	11/11	7	+	17469440..17470378	hypothetical protein
LOC_Os07g29730	NA	NA	7	+	17473093..17477552	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g29740	Os.47463.1.S1_x_at	2/11	7	+	17479001..17483862	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29740	Os.14491.2.S1_x_at	1/11	7	+	17479001..17483862	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29750	OsAffx.16482.1.S1_x_at	11/11	7	+	17489020..17491246	Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750	OsAffx.16482.1.S1_at	11/11	7	+	17489020..17491246	Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750	Os.46631.1.S1_x_at	3/11	7	+	17489020..17491246	Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29760	Os.20514.1.S1_x_at	11/11	7	+	17494808..17496308	Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29760	OsAffx.22518.1.S1_x_at	1/11	7	+	17494808..17496308	Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29770	Os.19330.3.S1_at	11/11	7	+	17496954..17507041	MYND finger family protein, expressed
LOC_Os07g29770	Os.19330.1.S1_x_at	11/11	7	+	17496954..17507041	MYND finger family protein, expressed
LOC_Os07g29780	Os.36953.2.S1_x_at	11/11	7	+	17504162..17506617	pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29780	Os.36953.1.S1_at	10/11	7	+	17504162..17506617	pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29794	Os.37000.2.S1_x_at	11/11	7	+	17512388..17519010	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0007568	biological_process	aging
GO:0009269	biological_process	response to desiccation
GO:0009414	biological_process	response to water deprivation
GO:0009651	biological_process	response to salt stress
GO:0009723	biological_process	response to ethylene stimulus
GO:0010150	biological_process	leaf senescence
GO:0004197	molecular_function	cysteine-type endopeptidase activity
GO:0008234	molecular_function	cysteine-type peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20514.1.S1_x_at--241--451	1	Chr07:17495754..17495778 (25 bp)	GCCCGCTAGCCGTGGGTCTGAACGC	LOC_Os07g29760
Os.20514.1.S1_x_at--305--425	1	Chr07:17495763..17495787 (25 bp)	CCGTGGGTCTGAACGCGGCGTACAT	LOC_Os07g29760
Os.20514.1.S1_x_at--805--385	1	Chr07:17495771..17495795 (25 bp)	CTGAACGCGGCGTACATGCAGACGT	LOC_Os07g29760
Os.20514.1.S1_x_at--157--261	1	Chr07:17495774..17495798 (25 bp)	AACGCGGCGTACATGCAGACGTACG	LOC_Os07g29760
Os.20514.1.S1_x_at--832--413	1	Chr07:17495776..17495800 (25 bp)	CGCGGCGTACATGCAGACGTACGTG	LOC_Os07g29760
Os.20514.1.S1_x_at--79--745	1	Chr07:17495807..17495831 (25 bp)	GTGTCGTGCCCGCTGGTGTGCCCGC	LOC_Os07g29760
Os.20514.1.S1_x_at--397--467	1	Chr07:17495834..17495858 (25 bp)	GCGTGGGTGAACCACGGCGTGCTCC	LOC_Os07g29760
Os.20514.1.S1_x_at--493--381	2	Chr07:17495855..17495879 (25 bp)	CTCCTCGTCGGCTACGGCGAGCGTG	LOC_Os07g29760
Os.20514.1.S1_x_at--286--461	1	Chr07:17495871..17495895 (25 bp)	GCGAGCGTGGGTTCGCGGCGCTGCG	LOC_Os07g29760
Os.20514.1.S1_x_at--830--415	3	Chr07:17495906..17495930 (25 bp)	CGCCCCTACTGGATCATCAAGAACT	LOC_Os07g29760
Os.20514.1.S1_x_at--498--153	1	Chr07:17495952..17495976 (25 bp)	AGCAGGGCTACTACCGGCTCTGCCG	LOC_Os07g29760

Target Sequence

GCCCGCTAGCCGTGGGTCTGAACGCGGCGTACATGCAGACGTACGTGGGCGGGGTGTCGTGCCCGCTGGTGTGCCCGCGC
GCGTGGGTGAACCACGGCGTGCTCCTCGTCGGCTACGGCGAGCGTGGGTTCGCGGCGCTGCGGCTGGGCCACCGCCCCTA
CTGGATCATCAAGAACTCGTGGGGGAAGGCGTGGGGGGAGCAGGGCTACTACCGGCTCTGCCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis