Browse Element(s) Details


Os.20540.1.S1_at

Description gb:AK065585.1
DB_XREF= gi:32975603
TID=Os.20540.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.20540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034M23, full insert sequence.
FL= gb:AK062096.1 gb:AK065585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4780011/11monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47770OsAffx.24770.1.S1_x_at11/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47770Os.49665.1.S1_at5/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47780Os.50858.1.S1_at5/112+29218349..29220371hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800Os.20540.1.S1_at11/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800OsAffx.24771.1.S1_x_at1/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47810Os.46084.1.S1_at9/112+29232278..29235749Dof domain, zinc finger family protein, expressed
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20540.1.S1_at--1080--10131Chr02:29224665..29224689 (25 bp)
TATCCTGGCAATTCTATGGGAACAA
LOC_Os02g47800
Os.20540.1.S1_at--514--7511Chr02:29224630..29224654 (25 bp)
GTGGTTCACTTTGGAGACTTCACAA
LOC_Os02g47800
Os.20540.1.S1_at--767--1511Chr02:29224603..29224627 (25 bp)
AGCAGCCCAAGGTTTGGTGCCTATT
LOC_Os02g47800
Os.20540.1.S1_at--538--6271Chr02:29224448..29224472 (25 bp)
GATGTTTGCCATTCAAGAAAGCCAG
LOC_Os02g47800
Os.20540.1.S1_at--575--2651Chr02:29224430..29224454 (25 bp)
AAGCCAGAAGGACTTGCCTGATGGT
LOC_Os02g47800
Os.20540.1.S1_at--803--4911Chr02:29224403..29224427 (25 bp)
GCTTGCTCTTGGTGAAAAGCCTACA
LOC_Os02g47800
Os.20540.1.S1_at--1002--10091Chr02:29224374..29224398 (25 bp)
TATGGCATGCAACGGCTGGTGTCAT
LOC_Os02g47800
Os.20540.1.S1_at--975--8611Chr02:29224358..29224382 (25 bp)
TGGTGTCATTGCAGCTGCGTCCATT
LOC_Os02g47800
Os.20540.1.S1_at--346--9151Chr02:29224343..29224367 (25 bp)
TGCGTCCATTGCTGCATTTGGTTAT
LOC_Os02g47800
Os.20540.1.S1_at--1043--3871Chr02:29224283..29224307 (25 bp)
CTGGGAGCGACTCATTCCTTTTGCA
LOC_Os02g47800
Os.20540.1.S1_at--1011--5511Chr02:29224208..29224232 (25 bp)
GAAAAGTCCTGTATAACCTGTATCA
LOC_Os02g47800
Target Sequence 
TATCCTGGCAATTCTATGGGAACAATACCGGAGAAGTGGTTCACTTTGGAGACTTCACAAACAGCAGCCCAAGGTTTGGT
GCCTATTGGGTTGATAAAAGCCGGATTAGGGGTGCATTTCTTGAAGGTGGAAGTCGAGAAGAATACGAGGCGATATCGAA
TGTTGTTCGGCGTAAAGCTAAGGTTATAAACATTGCTGAACTTGAAAAGCAAGGTNTGATGTTTGCCATTCAAGAAAGCC
AGAAGGACTTGCCTGATGGTGGGCTTGCTCTTGGTGAAAAGCCTACATATGTATGGCATGCAACGGCTGGTGTCATTGCA
GCTGCGTCCATTGCTGCATTTGGTTATTGGTACGGCAGGAAACGCCGTAGGTGGTGAAAAATNCTGGGAGCGACTCATTC
CTTTTGCAAATTCATCGTNTCCTGTGCCTACATAACTGATGGANTAAAGTTACTCAGAGAAAAGTCCTGTATAACCTGTA
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis