Browse Element(s) Details


Os.49665.1.S1_at

Description gb:AK063595.1
DB_XREF= gi:32973613
TID=Os.49665.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B04, full insert sequence.
FL= gb:AK063595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g477705/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47730OsAffx.16451.1.A1_x_at2/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730Os.45161.1.A1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.22699.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.16451.1.A1_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.828.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47744OsAffx.24769.1.S1_s_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744Os.48485.1.S1_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744OsAffx.24769.1.S1_at3/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47760Os.53523.1.A1_at11/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47760Os.52998.1.S1_x_at10/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47770OsAffx.24770.1.S1_x_at11/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47770Os.49665.1.S1_at5/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47780Os.50858.1.S1_at5/112+29218349..29220371hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800Os.20540.1.S1_at11/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800OsAffx.24771.1.S1_x_at1/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49665.1.S1_at--560--5331NONE
GAAGTCGAGCATTCTGAACCAAGGA
NONE
Os.49665.1.S1_at--652--2411NONE
AAAACAACAGATTTGCAGCCCGGCC
NONE
Os.49665.1.S1_at--168--3391NONE
CAGCCCGGCCAGTGATATTGTAGCA
NONE
Os.49665.1.S1_at--1094--6951NONE
GTAGCATCTTCTAAACCTGTATCAA
NONE
Os.49665.1.S1_at--1110--5131NONE
GCAAAAATTCCAACTGTTCCAGTGA
NONE
Os.49665.1.S1_at--469--9811Chr10:18453011..18453042 (25 bp)
TACAAATGATACTTCCCTTTTACCA
NONE
Os.49665.1.S1_at--542--152Chr07:3885104..3885129 (25 bp)
ATTAGCTCTCCTTTAGCTTTTCTTC
NONE
Os.49665.1.S1_at--786--4271Chr02:29200874..29200898 (25 bp)
CCTGTGTAATTCTTCCAAGACTGCA
LOC_Os02g47770
Os.49665.1.S1_at--372--9031Chr02:29200853..29200877 (25 bp)
TGCAGTAACCCTCCCTGTTGTTAAG
LOC_Os02g47770
Os.49665.1.S1_at--358--653Chr07:3885188..3885215 (25 bp)
ATGCAGCAGCATCAGTTACTTAGGA
NONE
Os.49665.1.S1_at--1124--1291Chr02:29200791..29200815 (25 bp)
AGATGCATTGTTGCCATGAGAGGTA
LOC_Os02g47770
Target Sequence 
GAAGTCGAGCATTCTGAACCAAGGATGCCTACTGAAGATAGACACGTGTCACTAAAACAACAGATTTGCAGCCCGGCCAG
TGATATTGTAGCATCTTCTAAACCTGTATCAAAAGATAGAAGTATAATTGCTGCCAAAGAAGGATTGGGTAGAGCAAAAA
TTCCAACTGTTCCAGTGAATACAAATGATACTTCCCTTTTACCAAAGAAGATTAAACCACCCACCACAACACCATCAGCA
GCAGCAGCAGCAGCATGATGCATGAGAGAGTGAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTA
ATTAGCTCTCCTTTAGCTTTTCTTCTCCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTC
ATGCAGCAGCATCAGTTACTTAGGAGAGTAGATGCATTGTTGCCATGAGAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis