Browse Element(s) Details


Os.52998.1.S1_x_at

Description gb:AK070353.1
DB_XREF= gi:32980377
TID=Os.52998.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050A15, full insert sequence.
FL= gb:AK070353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4776010/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47730OsAffx.16451.1.A1_x_at2/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730Os.45161.1.A1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.22699.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.16451.1.A1_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.828.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47744OsAffx.24769.1.S1_s_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744Os.48485.1.S1_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744OsAffx.24769.1.S1_at3/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47760Os.53523.1.A1_at11/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47760Os.52998.1.S1_x_at10/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47770OsAffx.24770.1.S1_x_at11/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47770Os.49665.1.S1_at5/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47780Os.50858.1.S1_at5/112+29218349..29220371hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52998.1.S1_x_at--37--5411Chr02:29197574..29197598 (25 bp)
GAAGCTCAGCGGAGTGCTCTCAATG
LOC_Os02g47760
Os.52998.1.S1_x_at--80--7211Chr02:29197624..29197648 (25 bp)
GTCGAGGGATATTGTCCTTGTCCTT
LOC_Os02g47760
Os.52998.1.S1_x_at--1096--5831NONE
GACCTAGTGATCTTGGTGCTGCTAT
NONE
Os.52998.1.S1_x_at--794--5311Chr02:29197700..29197724 (25 bp)
GAAGTTATTGAGTTCCCTTTACCTG
LOC_Os02g47760
Os.52998.1.S1_x_at--738--1331Chr02:29197734..29197758 (25 bp)
AGAGGTTCCAGCTGCTCAGGTTATA
LOC_Os02g47760
Os.52998.1.S1_x_at--553--2411Chr02:29197791..29197815 (25 bp)
AAAACTCGTTTTGGGACTCACTGCT
LOC_Os02g47760
Os.52998.1.S1_x_at--1080--10091Chr02:29197921..29197945 (25 bp)
TATGGCCAGTGTGCAAGCTGCTGTT
LOC_Os02g47760
Os.52998.1.S1_x_at--1021--6611Chr02:29197966..29197990 (25 bp)
GTTGGATCCCCAGTTGCTTATGGAG
LOC_Os02g47760
Os.52998.1.S1_x_at--108--4931Chr02:29198032..29198056 (25 bp)
GCTTGCTTCTGAGACTTCAACTTGA
LOC_Os02g47760
Os.52998.1.S1_x_at--106--2731Chr02:29198080..29198104 (25 bp)
AAGCAGCAGTCCTTTTCAGATCTAC
LOC_Os02g47760
Os.52998.1.S1_x_at--469--9651Chr02:29198095..29198119 (25 bp)
TCAGATCTACTGTCCCCATATATAT
LOC_Os02g47760
Target Sequence 
GAAGCTCAGCGGAGTGCTCTCAATGCACTACTATTTCGAACTGGAGACCAGTCGAGGGATATTGTCCTTGTCCTTGCAAC
AAACCGACCTAGTGATCTTGGTGCTGCTATTACGGACCGCATTGATGAAGTTATTGAGTTCCCTTTACCTGGGGAGGAGG
AGAGGTTCCAGCTGCTCAGGTTATACTTAAACCACTATATGCTCAAGGAAGATGGAAAAAACTCGTTTTGGGACTCACTG
CTGAAAAAGCAACGGCAGAAGATACAAGTTAAGGACATAAGTGATGATTTGCTCAGGGAGGCTGCCAGGAAGATCAATGG
ATTCTCTGGCAGAGAGATTGCGAAGCTTATGGCCAGTGTGCAAGCTGCTGTTTATGGCCGCCCTGACTGTGTGTTGGATC
CCCAGTTGCTTATGGAGGTAGTTGAATACAAAGTGGCTGAGCATCATCAGCGCATCAAGCTTGCTTCTGAGACTTCAACT
TGAGCAATGTTATAGATTTTATCAGAAAGCAGCAGTCCTTTTCAGATCTACTGTCCCCATATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52998.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis