Browse Element(s) Details


Os.53523.1.A1_at

Description gb:AK073092.1
DB_XREF= gi:32983115
TID=Os.53523.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023H03, full insert sequence.
FL= gb:AK073092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4776011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47730OsAffx.16451.1.A1_x_at2/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730Os.45161.1.A1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.22699.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.16451.1.A1_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47730OsAffx.828.1.S1_x_at1/112+29168472..29176129retrotransposon protein, putative, unclassified
LOC_Os02g47744OsAffx.24769.1.S1_s_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744Os.48485.1.S1_at11/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47744OsAffx.24769.1.S1_at3/112+29184926..29189704Myb-related protein, putative, expressed
LOC_Os02g47760Os.53523.1.A1_at11/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47760Os.52998.1.S1_x_at10/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47770OsAffx.24770.1.S1_x_at11/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47770Os.49665.1.S1_at5/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47780Os.50858.1.S1_at5/112+29218349..29220371hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53523.1.A1_at--335--10091Chr02:29198235..29198259 (25 bp)
TAGGCTTGTCCGGTTCCAATTTTGT
LOC_Os02g47760
Os.53523.1.A1_at--536--3551Chr02:29198262..29198286 (25 bp)
CATCTCTTTGCCTGTAGCATATTTA
LOC_Os02g47760
Os.53523.1.A1_at--945--4471Chr02:29198271..29198295 (25 bp)
GCCTGTAGCATATTTATGGTGGTTT
LOC_Os02g47760
Os.53523.1.A1_at--565--7491Chr02:29198289..29198313 (25 bp)
GTGGTTTTTATGGAAATACAGGCAA
LOC_Os02g47760
Os.53523.1.A1_at--922--5571Chr02:29198301..29198325 (25 bp)
GAAATACAGGCAAATAGGTAAGACT
LOC_Os02g47760
Os.53523.1.A1_at--944--1011Chr02:29198316..29198340 (25 bp)
AGGTAAGACTGAGATGCGCATGCTG
LOC_Os02g47760
Os.53523.1.A1_at--5--3071Chr02:29198343..29198367 (25 bp)
AATCTTATTTGACTGAAGTGGTTCA
LOC_Os02g47760
Os.53523.1.A1_at--576--151Chr02:29198349..29198373 (25 bp)
ATTTGACTGAAGTGGTTCAACCATT
LOC_Os02g47760
Os.53523.1.A1_at--114--5331Chr02:29198357..29198381 (25 bp)
GAAGTGGTTCAACCATTCATCTTAT
LOC_Os02g47760
Os.53523.1.A1_at--318--8791Chr02:29198383..29198407 (25 bp)
TGTTAGAATTTGATTTTGTCTTCAT
LOC_Os02g47760
Os.53523.1.A1_at--374--6551Chr02:29198394..29198418 (25 bp)
GATTTTGTCTTCATTATCATAGATG
LOC_Os02g47760
Target Sequence 
TAGGCTTGTCCGGTTCCAATTTTGTTNCATCTCTTTGCCTGTAGCATATTTATGGTGGTTTTTATGGAAATACAGGCAAA
TAGGTAAGACTGAGATGCGCATGCTGNAAATCTTATTTGACTGAAGTGGTTCAACCATTCATCTTATTTGTTAGAATTTG
ATTTTGTCTTCATTATCATAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53523.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis