Browse Element(s) Details


Os.46084.1.S1_at

Description gb:AF542507.1
DB_XREF= gi:33332410
TID=Os.46084.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46084 (NCBI UniGene Cluster)
UG_TITLE=Dof-like protein 34 mRNA, partial cds
DEF=Oryza sativa Dof-like protein 34 mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g478109/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47780Os.50858.1.S1_at5/112+29218349..29220371hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800Os.20540.1.S1_at11/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800OsAffx.24771.1.S1_x_at1/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47810Os.46084.1.S1_at9/112+29232278..29235749Dof domain, zinc finger family protein, expressed
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47830Os.16068.2.S1_at11/112+29253460..29254535expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46084.1.S1_at--11--4131Chr02:29232814..29232838 (25 bp)
CGCAGTTCATGGGTGCTGGCATGAT
LOC_Os02g47810
Os.46084.1.S1_at--352--9351Chr02:29232769..29232793 (25 bp)
TCGCGGAGTACCATGCGCTGAGCGC
LOC_Os02g47810
Os.46084.1.S1_at--956--1591Chr02:29232581..29232614 (25 bp)
AGCTCCATTAGCTCGCTGGGACTGT
LOC_Os02g47810
Os.46084.1.S1_at--1043--9291Chr02:29232515..29232539 (25 bp)
TCCGCTGCCATCTGAGGCGAAGCAA
LOC_Os02g47810
Os.46084.1.S1_at--1112--2911Chr02:29232470..29232494 (25 bp)
AAGGACACGTGATCGAACGCCGCGA
LOC_Os02g47810
Os.46084.1.S1_at--646--4611Chr02:29232449..29232473 (25 bp)
GCGAGCCGCTGCAATCTGTGCAAGA
LOC_Os02g47810
Os.46084.1.S1_at--17--5711Chr02:29232383..29232407 (25 bp)
GACTACGTAGAATTGTTTGGCTTTA
LOC_Os02g47810
Os.46084.1.S1_at--101--9131Chr02:29232348..29232372 (25 bp)
TGCTGTTTTCCATCTTCTCATGCAT
LOC_Os02g47810
Os.46084.1.S1_at--56--9531NONE
TCTCATGCATGGTAATCTCCTGCTT
NONE
Os.46084.1.S1_at--388--471NONE
ATCTCCTGCTTATTTTCGTTTGTCT
NONE
Os.46084.1.S1_at--883--6851Chr02:29232298..29232321 (24 bp)
GTTTGTCTTTGTATTTCCCAACTAT
LOC_Os02g47810
Target Sequence 
CGCAGTTCATGGGTGCTGGCATGATGGGCATTGGCGGCGGCGGCGGCGGCGGCGTCGCGGAGTACCATGCGCTGAGCGCG
CTCCGGTACGCGGCAGGGCTCGGCGATCACCTGGCGCTGCCGTTCGGCGCGGGGCGGGCGGAGCACGACGCCGTCGAGGT
GAAGCCGGTGGCGGCGGAGAGGCTGCTGTCGCTCGAGTGGTGCGGCGAGGCGAGCCGCACGGCGGCGCCGGAGAGCTCCA
TTAGCTCGCTGGGACTGTGGAGCGGCATGATCGGCGGCGGGCACCATCACCATGGCTCCTCCGCTGCCATCTGAGGCGAA
GCAAGCTAGCATGCATGCAATGCGAAGGACACGTGATCGAACGCCGCGAGCCGCTGCAATCTGTGCAAGAAGGAAAGGAT
TAGCGGTTTGCTAATAGCATTAACAAAGTATGACTACGTAGAATTGTTTGGCTTTAATTTCTTTGCTGCTGTTTTCCATC
TTCTCATGCATGGTAATCTCCTGCTTATTTTCGTTTGTCTTTGTATTTCCCAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis