Browse Element(s) Details


OsAffx.12541.1.S1_at

Description tigr:9630.m04656
TID=OsAffx.12541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g478206/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800Os.20540.1.S1_at11/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800OsAffx.24771.1.S1_x_at1/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47810Os.46084.1.S1_at9/112+29232278..29235749Dof domain, zinc finger family protein, expressed
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47830Os.16068.2.S1_at11/112+29253460..29254535expressed protein
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12541.1.S1_at--993--1091Chr02:29248027..29248049 (23 bp)
AGTGGGACAGCTATGATTTCCAGCG
LOC_Os02g47820
OsAffx.12541.1.S1_at--656--7471Chr02:29248028..29248049 (22 bp)
GTGGGACAGCTATGATTTCCAGCGG
LOC_Os02g47820
OsAffx.12541.1.S1_at--1026--8611Chr02:29248029..29248049 (21 bp)
TGGGACAGCTATGATTTCCAGCGGC
LOC_Os02g47820
OsAffx.12541.1.S1_at--1081--7611Chr02:29248030..29248049 (20 bp)
GGGACAGCTATGATTTCCAGCGGCA
LOC_Os02g47820
OsAffx.12541.1.S1_at--695--8131NONE
GGACAGCTATGATTTCCAGCGGCAG
NONE
OsAffx.12541.1.S1_at--282--5651NONE
GACAGCTATGATTTCCAGCGGCAGG
NONE
OsAffx.12541.1.S1_at--199--2151NONE
ACAGCTATGATTTCCAGCGGCAGGC
NONE
OsAffx.12541.1.S1_at--1105--3391NONE
CAGCTATGATTTCCAGCGGCAGGCG
NONE
OsAffx.12541.1.S1_at--519--4871NONE
GCTATGATTTCCAGCGGCAGGCGGG
NONE
OsAffx.12541.1.S1_at--118--4091Chr02:29249008..29249032 (25 bp)
CGAGCGACGGCAGGGTGCGGCTGAG
LOC_Os02g47820
OsAffx.12541.1.S1_at--774--5011Chr02:29249017..29249041 (25 bp)
GCAGGGTGCGGCTGAGGAGACGAGC
LOC_Os02g47820
Target Sequence 
AGTGGGACAGCTATGATTTCCAGCGGCAGGCGGGGGTGGCGAGCGGTGGCGGCGGCGGCAAGGCGAGGCGGCGGCAGCAG
CGGGAGCTCGCGCTGCTCGAGCAAGGCGAGGCGACGGCGGTGGAGGAGGAGGCGAGCGACGGCAGGGTGCGGCTGAGGAG
ACGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis