Browse Element(s) Details


Os.5993.1.S1_at

Description gb:AK102236.1
DB_XREF= gi:32987445
TID=Os.5993.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088C10, full insert sequence.
FL= gb:AK102236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4786011/11Adenylate cyclase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47830Os.16068.2.S1_at11/112+29253460..29254535expressed protein
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5993.1.S1_at--91--9551Chr02:29277498..29277522 (25 bp)
TCATTGCCCTGACAATTGGCGGTTT
LOC_Os02g47860
Os.5993.1.S1_at--860--4671Chr02:29277516..29277540 (25 bp)
GCGGTTTCGGCTATTTGGTGTTCAA
LOC_Os02g47860
Os.5993.1.S1_at--60--5851Chr02:29277541..29277565 (25 bp)
GAGCCTCAACCGGAGCTAACCGAAG
LOC_Os02g47860
Os.5993.1.S1_at--1104--5231Chr02:29277567..29277591 (25 bp)
GAATCAGGCAGCGACATGCTGCTTT
LOC_Os02g47860
Os.5993.1.S1_at--620--1651Chr02:29277630..29277654 (25 bp)
AGCCAAGAAGTCTCAAAACGGATCT
LOC_Os02g47860
Os.5993.1.S1_at--501--7791Chr02:29277712..29277736 (25 bp)
GGTCCTCACTCAGATCATTGGTCTC
LOC_Os02g47860
Os.5993.1.S1_at--339--311Chr02:29277787..29277811 (25 bp)
ATACCAGCACAAGCAACAGAGCAGT
LOC_Os02g47860
Os.5993.1.S1_at--145--1371Chr02:29277804..29277828 (25 bp)
AGAGCAGTCTTGATACTCGGGCCAA
LOC_Os02g47860
Os.5993.1.S1_at--184--8831Chr02:29277814..29277838 (25 bp)
TGATACTCGGGCCAAGTTACTTGGA
LOC_Os02g47860
Os.5993.1.S1_at--527--9471Chr02:29277884..29277908 (25 bp)
TCTGTAATGGATACTGGAAAGCCCC
LOC_Os02g47860
Os.5993.1.S1_at--125--5991Chr02:29277927..29277951 (25 bp)
GAGACGCTAGTAATCCCGATATAAT
LOC_Os02g47860
Target Sequence 
TCATTGCCCTGACAATTGGCGGTTTCGGCTATTTGGTGTTCAAGAGCCTCAACCGGAGCTAACCGAAGNGAATCAGGCAG
CGACATGCTGCTTTAAAAAGCTCACCNCCAAGTTCAACCNAGAACCAGAGAAAGCCAAGAAGTCTCAAAACGGATCTTCA
NTNTTCAGTACTCAGTCCAGACNCCAAACCGATGTTNTCCTGCGAGCTATAGNCGGTCCTCACTCAGATCATTGGTCTCA
TGGGGNCCATATNTGATAGATTTTACAATTTCAAGATAGATAAACTCATATACCAGCACAAGCAACAGAGCAGTCTTGAT
ACTCGGGCCAAGTTACTTGGAAGCTTAAAAACTGTGTACTAAAGAGCGTAGAGTTATACAATATCGTCTGTAATGGATAC
TGGAAAGCCCCCAGTATCAATAAATTTTGGAGACGCTAGTAATCCCGATATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis