Browse Element(s) Details


Os.10852.1.S1_s_at

Description gb:AK059653.1
DB_XREF= gi:32969671
TID=Os.10852.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C09, full insert sequence.
FL= gb:AK059653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4785011/11carbamoyl-phosphate synthase, small subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47830Os.16068.2.S1_at11/112+29253460..29254535expressed protein
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009618biological_processresponse to pathogenic bacteria
GO:0004049molecular_functionanthranilate synthase activity
GO:0004088molecular_functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10852.1.S1_s_at--1089--10391Chr02:29268078..29268102 (25 bp)
TTTTGTCTCTTCAGTACCATCCAGA
LOC_Os02g47850
Os.10852.1.S1_s_at--300--4991Chr02:29268118..29268254 (25 bp)
GCATGATTCTGACTTGGCTTTTGGT
LOC_Os02g47850
Os.10852.1.S1_s_at--543--4251Chr02:29268327..29268351 (25 bp)
CCGGGAGGTGAGAGGTTCTATTTCA
LOC_Os02g47850
Os.10852.1.S1_s_at--105--10531Chr02:29268348..29268372 (25 bp)
TTCAGATTTCTGATGAGAGCCACAA
LOC_Os02g47850
Os.10852.1.S1_s_at--1120--2251Chr02:29268379..29268403 (25 bp)
AAATAATCTGTTGTACCTGTAGCTT
LOC_Os02g47850
Os.10852.1.S1_s_at--152--6991Chr02:29268391..29268415 (25 bp)
GTACCTGTAGCTTTTCTTTCCTTAT
LOC_Os02g47850
Os.10852.1.S1_s_at--336--9791Chr02:29268418..29268442 (25 bp)
TAAGCTCCGACAAGCTTGAATGCGA
LOC_Os02g47850
Os.10852.1.S1_s_at--180--6671Chr02:29268464..29268488 (25 bp)
GTTGCTTTGTGACTGAATCAGCCTA
LOC_Os02g47850
Os.10852.1.S1_s_at--366--91Chr02:29268543..29268567 (25 bp)
ATTCCTATGCCTTGTAAAAGCTGCG
LOC_Os02g47850
Os.10852.1.S1_s_at--475--2691Chr02:29268560..29268584 (25 bp)
AAGCTGCGATGCATATGGGCTTGGA
LOC_Os02g47850
Os.10852.1.S1_s_at--496--10851Chr02:29268580..29268604 (25 bp)
TTGGAGTGCAACAGGGATGCCCTCA
LOC_Os02g47850
Target Sequence 
TTTTGTCTCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGCTTTTGGTGAATTTATAGAGATG
ATGAAGAACAACAGATTGTGAGGCGCAAATATAAGATACAAGGGTTTGGTTCTTGAACCGGGAGGTGAGAGGTTCTATTT
CAGATTTCTGATGAGAGCCACAAGAGTCAAAATAATCTGTTGTACCTGTAGCTTTTCTTTCCTTATTATAAGCTCCGACA
AGCTTGAATGCGAGGGTCAAGGACTCGAGAATAAGTTGCTTTGTGACTGAATCAGCCTATGCAAAAATATTTTACTCCTC
ANNNNNNAGGCTTCCTGTATTTCCATCCTTTACATTCCTATGCCTTGTAAAAGCTGCGATGCATATGGGCTTGGAGTGCA
ACAGGGATGCCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10852.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis