Browse Element(s) Details


Os.8038.1.S1_at

Description gb:AK068408.1
DB_XREF= gi:32978426
TID=Os.8038.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151N03, full insert sequence.
FL= gb:AK068408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4788011/11Kinesin light chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8038.1.S1_at--587--2031Chr02:29282328..29282352 (25 bp)
ACAGCTAACCCAGACGTCGATGACG
LOC_Os02g47880
Os.8038.1.S1_at--669--8011Chr02:29282297..29282321 (25 bp)
GGAGGCTTGCAGAGCTACTCAAGGA
LOC_Os02g47880
Os.8038.1.S1_at--213--8071Chr02:29282236..29282260 (25 bp)
GGAGAATCTGCTCGAGACCAACCCA
LOC_Os02g47880
Os.8038.1.S1_at--739--1151Chr02:29282222..29282246 (25 bp)
AGACCAACCCATATACTGTCACGAA
LOC_Os02g47880
Os.8038.1.S1_at--413--7031Chr02:29282192..29282216 (25 bp)
GTACAGTTGCAGCATGAGGCACACA
LOC_Os02g47880
Os.8038.1.S1_at--14--6211Chr02:29282177..29282201 (25 bp)
GAGGCACACACTGCTTTGCGAGGAG
LOC_Os02g47880
Os.8038.1.S1_at--838--1191Chr02:29282006..29282030 (25 bp)
AGTATGATTCGCTACCACTTGTTCC
LOC_Os02g47880
Os.8038.1.S1_at--1151--4711Chr02:29281972..29281996 (25 bp)
GCTCTTCACCGTGCTTGGGAAGTAA
LOC_Os02g47880
Os.8038.1.S1_at--920--5331Chr02:29281954..29281978 (25 bp)
GAAGTAAAGCGCTGCTTCCATGCTA
LOC_Os02g47880
Os.8038.1.S1_at--545--9071Chr02:29281942..29281966 (25 bp)
TGCTTCCATGCTATACGCAGCTGAG
LOC_Os02g47880
Os.8038.1.S1_at--513--2151Chr02:29281880..29281904 (25 bp)
ACAGCTTGGTTGGTTGATATTGCAG
LOC_Os02g47880
Target Sequence 
ACAGCTAACCCAGACGTCGATGACGAAAAGCGGAGGCTTGCAGAGCTACTCAAGGAGGCTGGTCGGGGGAGAAGCAGGAA
GGCAAAATCCCTGGAGAATCTGCTCGAGACCAACCCATATACTGTCACGAAGAGAGGTACAGTTGCAGCATGAGGCACAC
ACTGCTTTGCGAGGAGAAGCTTGATGCAAGCATGACGCTAAGGTGTATCAAATTGGGCTGTTTTTCTTTTTTCAGATTTG
GTGAGAGGGGTAATTGAAAATAGGATTTGTTTTGAGAATCTAGAAATGTCAAATGTTCTGATTAATTGTTGTAAAGTTGC
AAAGTATGATTCGCTACCACTTGTTCCCTGCTCATGGCTCTTCACCGTGCTTGGGAAGTAAAGCGCTGCTTCCATGCTAT
ACGCAGCTGAGNTTTTATAACTTTATATTGTAGACAGTGTGAGACTGAACAGCTTGGTTGGTTGATATTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis