Browse Element(s) Details


Os.11012.1.S1_at

Description gb:AK066348.1
DB_XREF= gi:32976366
TID=Os.11012.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059F24, full insert sequence.
FL= gb:AK066348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g478708/11RING-box protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47830Os.16068.2.S1_at11/112+29253460..29254535expressed protein
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0031463cellular_componentCul3-RING ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11012.1.S1_at--336--7451Chr02:29281109..29281133 (25 bp)
GTGTAACTGGATTCTTCTCGTCTTT
LOC_Os02g47870
Os.11012.1.S1_at--291--3071Chr02:29281215..29281239 (25 bp)
AATCTATCTTTGTTGTGTCAGGAGT
LOC_Os02g47870
Os.11012.1.S1_at--16--8051NONE
GGAGTTTGCAACCATGCGTTCCACT
NONE
Os.11012.1.S1_at--639--6611Chr02:29281275..29281299 (25 bp)
GTTGGCTCAAGACCCGTCAAGTGTG
LOC_Os02g47870
Os.11012.1.S1_at--18--2871Chr02:29281293..29281406 (25 bp)
AAGTGTGCCCTCTAGACAACAGCGA
LOC_Os02g47870
Os.11012.1.S1_at--608--8591Chr02:29281425..29281449 (25 bp)
TGGTCACTAGACAATTCTCTTTCGG
LOC_Os02g47870
Os.11012.1.S1_at--915--1611Chr02:29281457..29281481 (25 bp)
AGCGGCTTCAAGTTTCTCGTATCAA
LOC_Os02g47870
Os.11012.1.S1_at--576--8591Chr02:29281575..29281599 (25 bp)
TGGTAGCTCAGCGAATCTCCTCAAA
LOC_Os02g47870
Os.11012.1.S1_at--1111--3051Chr02:29281588..29281612 (25 bp)
AATCTCCTCAAACTTATTTTCGCTG
LOC_Os02g47870
Os.11012.1.S1_at--929--10351Chr02:29281644..29281668 (25 bp)
TTTTTCTGCTCATGATGTTCCAGCG
NONE
Os.11012.1.S1_at--798--691Chr02:29281658..29281682 (25 bp)
ATGTTCCAGCGGTATAACTTTTTGC
NONE
Target Sequence 
GTGTAACTGGATTCTTCTCGTCTTTTTGTGTTGCTTTTAGTGGATATTGCATTTTCGCAGTGAATTAAATCGAGCTGTGA
AGTCAACTATCCATGTACTGATGAACAATCTATCTTTGTTGTGTCAGGAGTTTGCAACCATGCGTTCCACTTCCACTGCA
TCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGACAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAGACA
ATTCTCTTTCGGGGGCAAAAGCGGCTTCAAGTTTCTCGTATCAAGTATTAGCACTAAGTGATAACTAATGATTACGATGG
GTAGGCTGCATTGTTAATGTTTCAGAAGCTTGTATTTTCGGTAGAAACATATCATGCTGGTAGCTCAGCGAATCTCCTCA
AACTTATTTTCGCTGAAATCAAGCAGCAGTTCGTATTTACTAAGTTTTTTTCTGCTCATGATGTTCCAGCGGTATAACTT
TTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis