Browse Element(s) Details


Os.16068.2.S1_at

Description gb:AK109110.1
DB_XREF= gi:32994319
TID=Os.16068.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-B12, full insert sequence.
FL= gb:AK109110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4783011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47810Os.46084.1.S1_at9/112+29232278..29235749Dof domain, zinc finger family protein, expressed
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47830Os.16068.2.S1_at11/112+29253460..29254535expressed protein
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16068.2.S1_at--3--6191Chr02:29253845..29253869 (25 bp)
GAGGACCAGTTCTACGGCATCAATG
LOC_Os02g47830
Os.16068.2.S1_at--980--7891Chr02:29253894..29253918 (25 bp)
GGTTCGAGATCAAGTACCCGGTGAT
LOC_Os02g47830
Os.16068.2.S1_at--898--2811Chr02:29253977..29254001 (25 bp)
AAGTTCACCCCAGGGAAACCTGCAG
LOC_Os02g47830
Os.16068.2.S1_at--352--2371Chr02:29253992..29254016 (25 bp)
AAACCTGCAGCATGGAAGAACGACA
LOC_Os02g47830
Os.16068.2.S1_at--47--10531Chr02:29254136..29254160 (25 bp)
TTCAGGTACCCTGCAAATGTGGTCA
LOC_Os02g47830
Os.16068.2.S1_at--400--8171Chr02:29254181..29254205 (25 bp)
GGAACATTCATTTCTGCGAAGCCCA
LOC_Os02g47830
Os.16068.2.S1_at--622--4591Chr02:29254196..29254220 (25 bp)
GCGAAGCCCAGTACGTGATTCATCA
LOC_Os02g47830
Os.16068.2.S1_at--990--3751Chr02:29254275..29254299 (25 bp)
CTCTTGTCGCAATAGTGTTCTTCAT
LOC_Os02g47830
Os.16068.2.S1_at--809--6731Chr02:29254291..29254315 (25 bp)
GTTCTTCATCTTCACTCTAGTTTTG
LOC_Os02g47830
Os.16068.2.S1_at--865--6991Chr02:29254337..29254361 (25 bp)
GTACTAGTTCCAAGCACTACTACCA
LOC_Os02g47830
Os.16068.2.S1_at--998--7011Chr02:29254373..29254397 (25 bp)
GTACATTAAACCCATTGAGCAGTGA
LOC_Os02g47830
Target Sequence 
GAGGACCAGTTCTACGGCATCAATGCCGTCGGCGGCGACCTGGAGAAGGGGTTCGAGATCAAGTACCCGGTGATGAAGCC
GATGGCGAGCTCCCGCGCCATGATCCACGACATCGACGACGGCTTCGAGATCAAGTTCACCCCAGGGAAACCTGCAGCAT
GGAAGAACGACAGCAAGGGAGACGGCAAAGGGCATCAGCAGCAACATCAACAACACCAACACCAACACCATCCACAGCAG
CATGGCATGCCCCAACACCATCCGCAGCACGGCATGCCCATGCCCCCAGGTTTCAGGTACCCTGCAAATGTGGTCAGGCA
AGGGCAGATAAGAGGTGGAACATTCATTTCTGCGAAGCCCAGTACGTGATTCATCATCAAGGTAGCTTAGGTTCATAACA
AACTTGGATGTATCTCATATAGGATACAACCTCTTGTCGCAATAGTGTTCTTCATCTTCACTCTAGTTTTGGGGTGGACT
GGGCAAAGATTTGTACTAGTTCCAAGCACTACTACCATATTGTATTTTGTACATTAAACCCATTGAGCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16068.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis