Browse Element(s) Details


Os.20689.1.S1_at

Description gb:AK121311.1
DB_XREF= gi:37990934
TID=Os.20689.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112F22, full insert sequence.
FL= gb:AK121311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0102011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01010Os.13477.1.S1_at9/112+3514..8377protein disulfide isomerases containing protein, expressed
LOC_Os02g01020Os.20689.1.S1_at11/112+9286..13896expressed protein
LOC_Os02g01030Os.11705.1.S1_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01030OsAffx.11854.1.S1_x_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01040OsAffx.24046.5.S1_x_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.5.S1_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.7.S1_x_at5/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.3.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.2.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040Os.43764.1.A1_at1/112+22133..24960hypothetical protein
LOC_Os02g01050Os.50704.1.S1_at10/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01050OsAffx.20303.1.S1_at7/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01060Os.16004.1.S1_at11/112+33032..33966Harpin-induced protein 1 containing protein, expressed
LOC_Os02g01070Os.52725.1.S1_at11/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01070Os.52725.2.S1_at9/112+34262..41100FG-GAP repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20689.1.S1_at--817--5531Chr02:9667..9691 (25 bp)
GAAACAGCTGTTCGTCTGCGCAGTA
LOC_Os02g01020
Os.20689.1.S1_at--392--6951Chr02:9645..9669 (25 bp)
GTAGAGCTCAGCGTCTCATGGCAAA
LOC_Os02g01020
Os.20689.1.S1_at--641--3291Chr02:9624..9648 (25 bp)
CAAAGGCTGAGCTGGTGGCATACAA
LOC_Os02g01020
Os.20689.1.S1_at--1113--9832Chr03:24004379..24004837 (25 bp)
TACAAATCTATTATGGCCCTCAGGA
NONE
Os.20689.1.S1_at--819--8331Chr02:9572..9596 (25 bp)
GGCTGCTAGGATATCTGACTCGTCA
LOC_Os02g01020
Os.20689.1.S1_at--1102--8911Chr02:9534..9558 (25 bp)
TGACGACCCTCGACTAGTGAAGAAT
LOC_Os02g01020
Os.20689.1.S1_at--610--6971Chr02:9472..9496 (25 bp)
GTAGCCAATAGTTTGTTTTCCTCTT
LOC_Os02g01020
Os.20689.1.S1_at--202--10691Chr02:9445..9469 (25 bp)
TTGCCGCATCATTTCAATGCTACGT
LOC_Os02g01020
Os.20689.1.S1_at--63--4851Chr02:9427..9451 (25 bp)
GCTACGTGGTATTTGGCTTTCGGGT
LOC_Os02g01020
Os.20689.1.S1_at--118--5431Chr02:9351..9375 (25 bp)
GAAGCCAATCTTTGTAGCGGATGCT
LOC_Os02g01020
Os.20689.1.S1_at--112--4691Chr02:9335..9359 (25 bp)
GCGGATGCTTGAACTCAACTGTAAT
LOC_Os02g01020
Target Sequence 
GAAACAGCTGTTCGTCTGCGCAGTAGAGCTCAGCGTCTCATGGCAAAGGCTGAGCTGGTGGCATACAAATCTATTATGGC
CCTCAGGATTGCTGAGGCTGCTAGGATATCTGACTCGTCACGGGATCTTGTTTTGACGACCCTCGACTAGTGAAGAATGT
GAGTGAGATGTTCATTGATTTGTGTGAAGAGCATAGTAGCCAATAGTTTGTTTTCCTCTTTTTTGCCGCATCATTTCAAT
GCTACGTGGTATTTGGCTTTCGGGTAAGCTGTGGGCTGTGGGTCTCTTTTTTCCTCCCCACCTGTTTTAACTTTGTGAAG
CCAATCTTTGTAGCGGATGCTTGAACTCAACTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis