Browse Element(s) Details


Os.20699.2.S1_x_at

Description gb:NM_184870.1
DB_XREF= gi:34896829
GEN=OJ1523_A02.5
TID=Os.20699.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20699 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OJ1523_A02.5), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4011011/11Nop14-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed
LOC_Os03g40084NANA3+22223436..22224648hypothetical protein
LOC_Os03g40090OsAffx.22693.1.S1_x_at11/113+22225901..22227021hypothetical protein
LOC_Os03g40100Os.8785.1.S1_at11/113+22236313..22239261ACT domain containing protein, putative, expressed
LOC_Os03g40110Os.20699.2.S1_x_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.20699.1.S1_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.23213.1.S1_at1/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40120NANA3+22249998..22250516hypothetical protein
LOC_Os03g40130OsAffx.25446.1.S1_at11/113+22253199..22254759universal stress protein family protein
LOC_Os03g40150Os.33624.3.S1_x_at11/113+22264996..22268465hypothetical protein
LOC_Os03g40150OsAffx.25216.1.S1_x_at7/113+22264996..22268465hypothetical protein
LOC_Os03g40160OsAffx.25217.1.S1_x_at11/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40160OsAffx.25217.2.S1_x_at4/113+22269012..22276271transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20699.2.S1_x_at--444--651Chr03:22241555..22241579 (25 bp)
ATGCATGGATTCTGATGCTCCTTAT
LOC_Os03g40110
Os.20699.2.S1_x_at--450--8311Chr03:22241429..22241453 (25 bp)
GGCTAGTGTACTTCTATCTGTGGCT
LOC_Os03g40110
Os.20699.2.S1_x_at--1073--3811Chr03:22241344..22241368 (25 bp)
CTGCCAATCTCTTCTTTGATGCAAG
LOC_Os03g40110
Os.20699.2.S1_x_at--732--9651Chr03:22241305..22241329 (25 bp)
TCAGACTTGCCTGGATTGTTACAAT
LOC_Os03g40110
Os.20699.2.S1_x_at--573--5331Chr03:22241236..22241260 (25 bp)
GAAGTCCATGCATCAAGGCAGCCAC
LOC_Os03g40110
Os.20699.2.S1_x_at--668--2931Chr03:22241222..22241246 (25 bp)
AAGGCAGCCACTCCAAATGCGAAAG
LOC_Os03g40110
Os.20699.2.S1_x_at--354--5431Chr03:22241188..22241212 (25 bp)
GAACCAATCAGGCAGTTGAATCCGA
LOC_Os03g40110
Os.20699.2.S1_x_at--953--4431Chr03:22241032..22241056 (25 bp)
GCCTTGATTATGACCCTGATCGGGA
LOC_Os03g40110
Os.20699.2.S1_x_at--96--6471Chr03:22240934..22240958 (25 bp)
GATAATTATTTCCTGTCTGCTGTGA
LOC_Os03g40110
Os.20699.2.S1_x_at--244--2371Chr03:22240859..22240883 (25 bp)
AAAGCCATGGCTTTCCTTCAGGAGC
LOC_Os03g40110
Os.20699.2.S1_x_at--194--8171Chr03:22240833..22240857 (25 bp)
GGAACATGCTTTTAAATCTGGACAG
LOC_Os03g40110
Target Sequence 
ATGCATGGATTCTGATGCTCCTTATTTCTCCTCTGATAATTTCAAGGCTAGTGTACTTCTATCTGTGGCTGAATGTTTAA
GGGGATTTGTTATTATACACGAAGAACTATGTTCGTTCCCCGAAATTTTCCTGCCAATCTCTTCTTTGATGCAAGAAATT
ATGGATAAATCAGACTTGCCTGGATTGTTACAATACATTTTACATGAAGTCATTGAGTTGATTAAAAACAGAAGTGATGA
AGTCCATGCATCAAGGCAGCCACTCCAAATGCGAAAGCAGAAGCCTGAACCAATCAGGCAGTTGAATCCGAAATTTGAAG
AGAATTACATTAAAGGCCTTGATTATGACCCTGATCGGGAAAGGGCACAAATGAAGAAAATGAAGAAACGCCTTAAGAGT
GAGAAGAAGGGTGCAATGCGCGAACTGCGTAAAGATAATTATTTCCTGTCTGCTGTGAAAGAGAAGGAGAGGATAAAACA
AGAGCAAGAGAGAGCTGAAAAGTATGGAAAAGCCATGGCTTTCCTTCAGGAGCAGGAACATGCTTTTAAATCTGGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20699.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis