Browse Element(s) Details


Os.20702.1.S1_at

Description gb:AK099234.1
DB_XREF= gi:32984443
TID=Os.20702.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106I02, full insert sequence.
FL= gb:AK059270.1 gb:AK099234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5323011/11Aminomethyltransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein
LOC_Os04g53220Os.4147.1.S1_at11/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_x_at8/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_at6/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53230Os.20702.1.S1_at11/114+31481897..31484526Aminomethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os04g53240Os.14109.1.S1_at8/114+31497308..31500105Autophagy-related protein 8 precursor, putative, expressed
LOC_Os04g53250OsAffx.14394.1.S1_at10/114+31502654..31504041hypothetical protein
LOC_Os04g53250Os.55517.1.S1_x_at1/114+31502654..31504041hypothetical protein
LOC_Os04g53260OsAffx.26590.2.S1_at10/114+31508706..31510284Common central domain of tyrosinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004047molecular_functionaminomethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20702.1.S1_at--1147--3891Chr04:31483999..31484023 (25 bp)
CTGGTCTCTCATGGGCAATTGGCAA
LOC_Os04g53230
Os.20702.1.S1_at--692--5931Chr04:31484053..31484077 (25 bp)
GAGCAGATGTGATCCTCAAGCAGCT
LOC_Os04g53230
Os.20702.1.S1_at--767--2331Chr04:31484090..31484114 (25 bp)
AAAGATCAGGCGTGTCGGTCTCCTC
LOC_Os04g53230
Os.20702.1.S1_at--467--4171Chr04:31484125..31484149 (25 bp)
CGCCTCCTCGGAGTCATAGTGAGAT
LOC_Os04g53230
Os.20702.1.S1_at--382--5371Chr04:31484213..31484237 (25 bp)
GAAGAACATCGCCATGGGCTACGTA
LOC_Os04g53230
Os.20702.1.S1_at--348--7851Chr04:31484229..31484253 (25 bp)
GGCTACGTAAAATCCGGTTTGCACA
LOC_Os04g53230
Os.20702.1.S1_at--606--9831Chr04:31484268..31484292 (25 bp)
TTCAAGGTTGTCGTCCGTGGGAAGT
LOC_Os04g53230
Os.20702.1.S1_at--370--7311Chr04:31484284..31484308 (25 bp)
GTGGGAAGTCCTACGATGCCGTCGT
LOC_Os04g53230
Os.20702.1.S1_at--585--2911Chr04:31484364..31484388 (25 bp)
AAGGATGCTCCTTCGGTTGAAATTT
LOC_Os04g53230
Os.20702.1.S1_at--706--3131Chr04:31484384..31484408 (25 bp)
AATTTTCTCATGCAACTCTCTTGTC
LOC_Os04g53230
Os.20702.1.S1_at--601--1471Chr04:31484423..31484447 (25 bp)
AGCACCGCAACTGTAACTTCTGTAA
LOC_Os04g53230
Target Sequence 
CTGGTCTCTCATGGGCAATTGGCAAGAGGAGGAAAGCAGAAGGCGGCTTCCTGGGAGCAGATGTGATCCTCAAGCAGCTC
CAGGAAGGCCCAAAGATCAGGCGTGTCGGTCTCCTCTCGCAAGGACCGCCTCCTCGGAGTCATAGTGAGATTGTGAGCAA
CTCCGGGGAGAACATTGGTGAGGTTACCAGTGGAGGGTTCAGCCCCTGCTTGAAGAAGAACATCGCCATGGGCTACGTAA
AATCCGGTTTGCACAAGGCTGGGACAGAGTTCAAGGTTGTCGTCCGTGGGAAGTCCTACGATGCCGTCGTCACCAAGATG
CCGTTCGTGCCGACCNANGTACTACAAACCCTCATNGATTTGTACAAAGGATGCTCCTTCGGTTGAAATTTTCTCATGCA
ACTCTCTTGTCGCTGCTTGTTCTGCAGCACCGCAACTGTAACTTCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis