Browse Element(s) Details


Os.10836.2.S1_at

Description gb:AK110887.1
DB_XREF= gi:32996096
TID=Os.10836.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-H03, full insert sequence.
FL= gb:AK110887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5320010/11exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53170Os.28071.1.S1_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53170OsAffx.26585.1.S1_s_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53180Os.54440.1.S1_at11/114+31447144..31447965expressed protein
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein
LOC_Os04g53220Os.4147.1.S1_at11/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_x_at8/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_at6/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53230Os.20702.1.S1_at11/114+31481897..31484526Aminomethyltransferase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10836.2.S1_at--493--671Chr04:31461365..31461385 (21 bp)
ATGAAGCTCCCGTTCCATGTGTTCT
LOC_Os04g53200
Os.10836.2.S1_at--538--4332Chr01:24125304..24125324 (21 bp)
CCATGTGTTCTGTGATTCTGTCTGC
NONE
Os.10836.2.S1_at--965--9051Chr04:31461329..31461353 (25 bp)
TGCTTGCTTTTTCTATGGACCAGTT
LOC_Os04g53200
Os.10836.2.S1_at--498--5851Chr04:31461312..31461336 (25 bp)
GACCAGTTTCGAACAGCAGTCTGAA
LOC_Os04g53200
Os.10836.2.S1_at--636--6271NONE
GATGTCTCGGAGGTTTGCACACGAT
NONE
Os.10836.2.S1_at--989--8091Chr04:31460153..31460177 (25 bp)
GGACCTGCAGGATCAGCTATAGCAC
LOC_Os04g53200
Os.10836.2.S1_at--931--10011Chr04:31460134..31460158 (25 bp)
TAGCACATGCATGTTTTGCTCCCAG
LOC_Os04g53200
Os.10836.2.S1_at--87--9111Chr04:31460118..31460142 (25 bp)
TGCTCCCAGTTGGTTGCAGCTTCAA
LOC_Os04g53200
Os.10836.2.S1_at--626--2471Chr04:31460095..31460119 (25 bp)
AACACATGGGAAACGGGCGGCTCCA
LOC_Os04g53200
Os.10836.2.S1_at--753--4651Chr04:31460051..31460075 (25 bp)
GCGTCCTGCATGTATGGCGCCAGCA
LOC_Os04g53200
Os.10836.2.S1_at--634--5091Chr04:31459966..31459990 (25 bp)
GCACGCTAGCTTATTTACTCTTTAT
LOC_Os04g53200
Target Sequence 
ATGAAGCTCCCGTTCCATGTGTTCTGTGATTCTGTCTGCTTGCTTTTTCTATGGACCAGTTTCGAACAGCAGTCTGAACC
AGAGAGAGAAGAAATTTAGATGTCTCGGAGGTTTGCACACGATCAACGGATCAAGCCATCAAGGTACATGGGATGATGGG
AGGGAAACCTGGTACCCGTACGCCCTCTTGCAGCATGAGAAATGGACCTGCAGGATCAGCTATAGCACATGCATGTTTTG
CTCCCAGTTGGTTGCAGCTTCAACACATGGGAAACGGGCGGCTCCACATCCATCTTGCGCTGACCGCGTCCTGCATGTAT
GGCGCCAGCATCGGCCACGAGGCTTCGATTTCTTCTTCCTGCCCCGCCATGACCCGCACTCCTTCCGATTGCACGCTAGC
TTATTTACTCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10836.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis