Browse Element(s) Details


OsAffx.26585.1.S1_s_at

Description tigr:9632.m05146
TID=OsAffx.26585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5317011/11Bromodomain containing protein, expressed
LOC_Os04g5307011/11hypothetical protein
LOC_Os04g531308/11Bromodomain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53120Os.57563.1.S1_s_at3/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120OsAffx.26587.1.S1_x_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120Os.57563.1.S1_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53130OsAffx.26585.1.S1_s_at8/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.46481.2.S1_x_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.28071.1.S1_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53140OsAffx.26586.1.S1_at11/114+31431458..31431901hypothetical protein
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53170Os.28071.1.S1_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53170OsAffx.26585.1.S1_s_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53180Os.54440.1.S1_at11/114+31447144..31447965expressed protein
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26585.1.S1_s_at--966--4952Chr04:31445372..31445396 (25 bp)
GCATAATGTGCTGCAGATTGTGCGG
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--1101--6033Chr04:31445314..31445338 (25 bp)
GAGATCGAGCTGGATATTGATGAGA
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--581--773Chr04:31445286..31445310 (25 bp)
ATGTCGAGACACAGTGGGAGCTTGA
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--685--3453Chr04:31445275..31445299 (25 bp)
CAGTGGGAGCTTGATCGATTCGTCA
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--571--6392Chr04:31445263..31445287 (25 bp)
GATCGATTCGTCAACAACTTCAAGA
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--618--7092Chr04:31445254..31445278 (25 bp)
GTCAACAACTTCAAGAAGGCGCTCA
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--337--8373Chr04:31445237..31445261 (25 bp)
GGCGCTCAACAAGAGTCGACGGGCT
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--760--3273Chr04:31445231..31445255 (25 bp)
CAACAAGAGTCGACGGGCTGCCATT
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--678--13Chr04:31445209..31445233 (25 bp)
ATTGTTAATGGTGAAAATGCCGATG
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--23--7133Chr04:31445185..31445209 (25 bp)
GTCATTGATGCTTCCGTGGCTAATG
LOC_Os04g53170
OsAffx.26585.1.S1_s_at--723--8853Chr04:31445180..31445204 (25 bp)
TGATGCTTCCGTGGCTAATGATAGT
LOC_Os04g53170
Target Sequence 
GCATAATGTGCTGCAGATTGTGCGGAAGAGGAACGGCAATCCTGAGCTGGTTGGGGGTGAGATCGAGCTGGATATTGATG
AGATGGATGTCGAGACACAGTGGGAGCTTGATCGATTCGTCAACAACTTCAAGAAGGCGCTCAACAAGAGTCGACGGGCT
GCCATTGTTAATGGTGAAAATGCCGATGTCATTGATGCTTCCGTGGCTAATGATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26585.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis